Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0091
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0743 + 26847652-26849424 32 0.40
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 32 0.40
05_03_0256 - 11110636-11110875 32 0.40
07_03_1021 - 23347426-23347619,23348040-23348145,23348257-23348268 31 0.70
06_03_1466 + 30350112-30350978 31 0.70
08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499 29 2.2
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 29 2.8
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 28 5.0
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 28 5.0
01_01_1189 + 9454042-9455655 28 5.0
10_08_0978 + 21994359-21996961,21997089-21998229 28 6.6
07_01_1027 - 8873582-8876275 28 6.6
06_01_0832 - 6269249-6271794,6272083-6272176 28 6.6
04_04_0955 + 29640612-29643305 28 6.6
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 28 6.6
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 28 6.6
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 28 6.6
03_03_0164 - 14979364-14979479,14979613-14980102 27 8.7
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 27 8.7
>11_06_0743 + 26847652-26849424
Length = 590
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 528 PRN*RKTRRGH*QRSGRARGRPPKSSSMWPTWPPDSNSASSRRSTA 391
P R+ R G R R R P SSS P WP + A++R + A
Sbjct: 295 PPELRRARSGRCSPRCRRRARAPPSSSTSPPWPEPALPAAARTAAA 340
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 530 RRETSGR-RGEDISSGQGERAGGHRSRQACGRLGHRTRTQPAAEGRQRTNRSEA 372
RRE R R +D +G + R R G HR+R++ ++GR R +RS +
Sbjct: 113 RREHHDRERSDDRDRRRGHDSERRRDRDRDGHRRHRSRSRSPSKGRDRRSRSRS 166
>05_03_0256 - 11110636-11110875
Length = 79
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 506 GEDISSGQGERAGGHRSRQ-ACGRLGHRTRTQPAAEGRQRTNRSEADK 366
GE+ +SG G+ GG SR G R + GR+R NR + D+
Sbjct: 26 GEEEASGGGKNVGGRMSRHPRSGATQQRGKGNHIGVGRKRPNRKDQDR 73
>07_03_1021 - 23347426-23347619,23348040-23348145,23348257-23348268
Length = 103
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 479 ERAGGHRSRQACGRLGHRTRTQPA 408
+R GHRS ACG GH R +P+
Sbjct: 63 KRLSGHRSAAACGPSGHTARPRPS 86
>06_03_1466 + 30350112-30350978
Length = 288
Score = 31.1 bits (67), Expect = 0.70
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 559 PTDXDKQISXAAKLAEDAERTLAAVRESAREAT-EVVKHVADLATGLELSQQPKVDSALT 383
P D ++ + AA DA LA + EA ++ HVAD L S ++ SAL
Sbjct: 93 PQDALRRSTAAADRLLDAFLLLADAHQGFHEALLDLTHHVADARAALRRSDAARLASALR 152
Query: 382 EARQIRDDIA 353
R+ +IA
Sbjct: 153 SQRRAEKEIA 162
>08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499
Length = 265
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 539 NKXRRETSGRRGEDISSGQGERAG-GHRSRQACG 441
N R+ R+G I SG+G+ AG GH+ ++A G
Sbjct: 81 NPGARKQKTRKGRGIGSGKGKTAGRGHKGQKARG 114
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -2
Query: 530 RRETSGRRGEDISSGQGERAGGHRSRQACGRLGHRTRTQPAAEGRQRTNRS 378
+ + G G D G+G GG R+AC + R P Q ++ S
Sbjct: 113 KNDGGGDGGSDGGGGRGGGGGGGGGRRACEAFSFKNRAPPRPSSSQASSPS 163
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 483 GRARGRPPKSSSMWPTWPPDSNSASSRRSTAH*PKRGR 370
GR GRPPK ++ PT PP S A + T KRG+
Sbjct: 626 GRRIGRPPKRAAAPPT-PPPSKRAKDDKPTR---KRGK 659
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 524 ETSGRRGEDISSGQGERAGGHRSRQACGRLGHRTRTQP 411
E + G + G E AGG + ++A GR+ R P
Sbjct: 387 EANDNEGMEFDRGGEEEAGGWKGKEAMGRVSRRRSCTP 424
>01_01_1189 + 9454042-9455655
Length = 537
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -3
Query: 556 TDXDKQISXAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 389
T+ DKQ + ++ED + TLAA ++ E+ + VA + ++ ++ K+DS+
Sbjct: 418 TEDDKQGADTPDVSEDKKTTLAAEKDGNGESKD---EVAAPKSSNDMGREEKIDSS 470
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 490 AVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRD 362
A R+ TEV + D+AT + +QP S + + IRD
Sbjct: 74 AARDVTEPETEVASNDPDIATAVTQQEQPSTWSPIRDWSPIRD 116
>07_01_1027 - 8873582-8876275
Length = 897
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 490 AVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRD 362
A R+ TEV + D+AT + +QP S + + IRD
Sbjct: 74 AARDVTEPETEVASNDPDIATAVTQQEQPSTWSPIRDWSPIRD 116
>06_01_0832 - 6269249-6271794,6272083-6272176
Length = 879
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 490 AVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRD 362
A R+ TEV + D+AT + +QP S + + IRD
Sbjct: 56 AARDVTEPETEVASNDPDIATAVTQQEQPSTWSPIRDWSPIRD 98
>04_04_0955 + 29640612-29643305
Length = 897
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 490 AVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRD 362
A R+ TEV + D+AT + +QP S + + IRD
Sbjct: 74 AARDVTEPETEVASNDPDIATAVTQQEQPSTWSPIRDWSPIRD 116
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 545 QTNKXRRETSGRRGEDISSGQGERAGGHRSRQAC---GRLGH 429
Q ++ RRE G G D SG + A + S+ C G+LGH
Sbjct: 129 QPHRSRRERDGN-GSDGKSGSSQAANRNVSKDKCRYCGKLGH 169
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = -3
Query: 583 NVGXRNLRPTDXDKQISXAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQ- 407
N G +L+P K+ S A +A E+T +R +E + V D ++ ++
Sbjct: 79 NPGQPHLQPPAQPKESSTATTMAAATEKTAEEIRRELQELQRQHREVEDTEAKEDVKKEA 138
Query: 406 ----PKVDSALTEARQIRD 362
P+ SA E + RD
Sbjct: 139 EAEGPEGGSAAAEGGERRD 157
>01_05_0251 +
19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 490 AVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRD 362
A R+ TEV + D+AT + +QP S + + IRD
Sbjct: 74 AARDVTEPETEVASNDPDIATAVTQQEQPSTWSPIRDWSPIRD 116
>03_03_0164 - 14979364-14979479,14979613-14980102
Length = 201
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 536 KXRRETSGRRGEDISSGQGERAGGHRSRQACG 441
K R + RRG + SG GE G R R+ G
Sbjct: 62 KARGQWQQRRGGGVGSGNGEARGRRRQRRGPG 93
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/70 (22%), Positives = 26/70 (37%)
Frame = -3
Query: 589 HXNVGXRNLRPTDXDKQISXAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQ 410
H N D AA DAE+ R A + V++ G++ Q
Sbjct: 69 HTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARAVADAVRVINDKVSEALVGMDPQQ 128
Query: 409 QPKVDSALTE 380
Q ++D A+ +
Sbjct: 129 QSQIDQAIMD 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,314,283
Number of Sequences: 37544
Number of extensions: 250726
Number of successful extensions: 982
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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