Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0091
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 31 0.63
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 31 0.63
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 31 0.63
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 31 0.63
AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophi... 28 4.4
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 28 5.9
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 28 5.9
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 28 5.9
U40802-10|AAK19008.2| 374|Caenorhabditis elegans Hypothetical p... 27 7.7
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 27 7.7
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 551 QXQTNKXRRETSGRRGEDISSGQGERAGGHRSRQACGRLGHRTRTQPAAEGRQRTNRSEA 372
+ + K R+ S R S +R+ H+ + GR HR+R++ ++ R R NRS +
Sbjct: 600 EDRERKRHRKRSRSRRRSRSCSPRDRSREHKKSRKSGR-HHRSRSRSSSRDRHRRNRSRS 658
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 551 QXQTNKXRRETSGRRGEDISSGQGERAGGHRSRQACGRLGHRTRTQPAAEGRQRTNRSEA 372
+ + K R+ S R S +R+ H+ + GR HR+R++ ++ R R NRS +
Sbjct: 686 EDRERKRHRKRSRSRRRSRSCSPRDRSREHKKSRKSGR-HHRSRSRSSSRDRHRRNRSRS 744
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 551 QXQTNKXRRETSGRRGEDISSGQGERAGGHRSRQACGRLGHRTRTQPAAEGRQRTNRSEA 372
+ + K R+ S R S +R+ H+ + GR HR+R++ ++ R R NRS +
Sbjct: 688 EDRERKRHRKRSRSRRRSRSCSPRDRSREHKKSRKSGR-HHRSRSRSSSRDRHRRNRSRS 746
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 551 QXQTNKXRRETSGRRGEDISSGQGERAGGHRSRQACGRLGHRTRTQPAAEGRQRTNRSEA 372
+ + K R+ S R S +R+ H+ + GR HR+R++ ++ R R NRS +
Sbjct: 686 EDRERKRHRKRSRSRRRSRSCSPRDRSREHKKSRKSGR-HHRSRSRSSSRDRHRRNRSRS 744
>AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform b
protein.
Length = 165
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 509 RGEDISSGQGERAGGHRSRQACGRLGHRTRTQPAAEG 399
RGE +S+ G+R G R R G R +PA G
Sbjct: 27 RGERVSNENGDRPQGENRRGGPRRGGERGAARPAGRG 63
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 468 RPPKSSSMWPTWPP 427
RPP S WPT+PP
Sbjct: 281 RPPSHGSAWPTFPP 294
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 468 RPPKSSSMWPTWPP 427
RPP S WPT+PP
Sbjct: 303 RPPSHGSAWPTFPP 316
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 27.9 bits (59), Expect = 5.9
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 APRN*RKTRRGH*QRSGRARGRPPKSSSMWPTWPPDSNSASSRRSTAH-*PKRGR*EMTS 355
AP + +K R G SG RGR K SS + +SSR +TA P R
Sbjct: 818 APGSSKKGRVG----SGGTRGRKRKVSSESVQLKKRNRKSSSRATTASPGPSEDRFSFQR 873
Query: 354 PVSSDDAT 331
P SDD T
Sbjct: 874 PQDSDDVT 881
>U40802-10|AAK19008.2| 374|Caenorhabditis elegans Hypothetical
protein ZC477.2 protein.
Length = 374
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 189 KRNIDLIIKKHVKVLFHWKFF 251
K N+ LII+ H+KV F ++FF
Sbjct: 287 KFNLKLIIRSHMKVPFGYRFF 307
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 512 RRGEDISSGQGERAGGHRSRQACGRLGHRTRTQPAAEG 399
R GE +S+ G+R G R R G R +PA G
Sbjct: 86 RDGERVSNENGDRPQGENRRGGPRRGGERGAARPAGRG 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,432,013
Number of Sequences: 27780
Number of extensions: 216537
Number of successful extensions: 581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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