Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0091
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64670.1 68418.m08127 ribosomal protein L15 family protein          29   3.1  
At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to e...    29   3.1  
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c...    29   3.1  
At5g39300.1 68418.m04759 expansin, putative (EXP25) similar to a...    28   4.1  
At5g39280.1 68418.m04757 expansin, putative (EXP23) similar to e...    28   4.1  
At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai...    28   5.4  
At1g54960.1 68414.m06277 NPK1-related protein kinase, putative (...    28   5.4  
At1g16770.1 68414.m02015 hypothetical protein                          28   5.4  
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit...    27   7.2  
At3g15357.1 68416.m01947 expressed protein                             27   9.5  
At3g06030.1 68416.m00688 NPK1-related protein kinase, putative (...    27   9.5  

>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
          Length = 281

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 527 RETSGRRGEDISSGQGERAG-GHRSRQACGRL 435
           R+   R+G  I SG+G+ AG GH+ ++A G +
Sbjct: 75  RKLKTRKGRGIGSGKGKTAGRGHKGQKARGTM 106


>At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to
           expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
           gene family, PMID:11641069
          Length = 296

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 322 KVVSSNFL*PPRLIQNKIYCNPPKKNF 242
           K+ ++NF  P     N  +CNPP+K+F
Sbjct: 144 KITATNFCPPDFTKPNDNWCNPPQKHF 170


>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 301

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 515 GRRGEDISSGQGERAGGHRSRQACGRLGHRTR 420
           G  G+    G G R+GG      CG +GH  R
Sbjct: 112 GSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143


>At5g39300.1 68418.m04759 expansin, putative (EXP25) similar to
           alpha-expansin 4 precursor GI:16923355 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 260

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 322 KVVSSNFL*PPRLIQNKIYCNPPKKNF 242
           K+ ++NF  P       ++CNPP+K+F
Sbjct: 109 KITATNFCPPDYSKTEGVWCNPPQKHF 135


>At5g39280.1 68418.m04757 expansin, putative (EXP23) similar to
           expansin2 GI:4884433 from [Lycopersicon esculentum];
           alpha-expansin gene family, PMID:11641069
          Length = 259

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 322 KVVSSNFL*PPRLIQNKIYCNPPKKNF 242
           K+ ++NF  P       ++CNPP+K+F
Sbjct: 108 KITATNFCPPDYSKTEGVWCNPPQKHF 134


>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
           domain-containing protein similar to BRCA1-associated
           protein 2 [Homo sapiens] GI:3252872; contains Pfam
           profile PF02148: Zn-finger in ubiquitin-hydrolases and
           other protein
          Length = 488

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 195 SVCIRKFQCTSTVNWTYLN 139
           ++C   FQC+ T  WTYL+
Sbjct: 191 TLCDHSFQCSCTSKWTYLS 209


>At1g54960.1 68414.m06277 NPK1-related protein kinase, putative
           (ANP2) similar to protein kinase [Nicotiana tabacum]
           gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
           protein kinase 2, partial cds GI:2342424
          Length = 596

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 401 LRLLAEFESGGQVGHMLDDFGGLPRAL 481
           L +L EF  GG +  +L+ FG  P ++
Sbjct: 146 LNILLEFVPGGSISSLLEKFGAFPESV 172


>At1g16770.1 68414.m02015 hypothetical protein
          Length = 324

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 542 TNKXRRETSGRRGEDISSGQGERAGGHRSRQACGRLGH 429
           T + +   SG+ G D  SG GE +G     +  G  GH
Sbjct: 58  TEEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGH 95


>At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q43867, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 194

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +3

Query: 282 ISLGG*RKLLDTTFALESHHQNLPAMSSLICLASVSALSTFGCWLSSSPVAKSATCL 452
           I+L   R+LL  +  L+S H++L  + +L        +S    WLSSS   K  TCL
Sbjct: 98  IALSDCRELLQDS--LDSLHKSLAVLRTLRASEFQQQMSDLATWLSSSLTDKD-TCL 151


>At3g15357.1 68416.m01947 expressed protein
          Length = 143

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 330 ESHHQNLPAMSSLICLASVSALSTFGCWLSSSPVAKS 440
           E+   N PA+ SL+C   + A S +  +  + PV KS
Sbjct: 33  ETVQNNGPAIRSLLCFNQMPAASQYPVYSETFPVMKS 69


>At3g06030.1 68416.m00688 NPK1-related protein kinase, putative
           (ANP3) similar to protein kinase [Nicotiana tabacum]
           gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
           protein kinase 3 GI:2342426
          Length = 651

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 401 LRLLAEFESGGQVGHMLDDFGGLP 472
           L +L EF  GG +  +L+ FG  P
Sbjct: 146 LNILMEFVPGGSISSLLEKFGSFP 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,809
Number of Sequences: 28952
Number of extensions: 199057
Number of successful extensions: 574
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)