Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0090
(413 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81; Eukary... 115 4e-25
UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33; Eukary... 88 8e-17
UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellula... 87 2e-16
UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6; Alveola... 77 1e-13
UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=... 64 1e-09
UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1; ... 63 2e-09
UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2; Cryptos... 62 3e-09
UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15 ... 61 8e-09
UniRef50_A0DBI8 Cluster: Chromosome undetermined scaffold_44, wh... 60 1e-08
UniRef50_UPI00002376D7 Cluster: PREDICTED: similar to 60S riboso... 50 2e-05
UniRef50_Q7QRA8 Cluster: GLP_2_9191_9649; n=2; Giardia intestina... 48 6e-05
UniRef50_Q019M2 Cluster: DNAJ_NEIMB Chaperone protein dnaJ sp|P6... 40 0.015
UniRef50_Q0D991 Cluster: Os06g0732000 protein; n=9; Oryza sativa... 37 0.14
UniRef50_Q9UXG6 Cluster: Putative uncharacterized protein ORF-c4... 35 0.76
UniRef50_UPI0000EBD742 Cluster: PREDICTED: similar to 60S riboso... 34 1.0
UniRef50_Q2KL02 Cluster: 60S ribosomal protein L35; n=1; Siniper... 33 3.1
>UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81;
Eukaryota|Rep: 60S ribosomal protein L35 - Homo sapiens
(Human)
Length = 123
Score = 115 bits (276), Expect = 4e-25
Identities = 59/93 (63%), Positives = 67/93 (72%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
LRVAKVTGG ASKLSKIRVVRK+ ARV V +Q K NLR YK KYKPL L KTRA
Sbjct: 31 LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRA 90
Query: 278 MRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVKA 376
MR+ KHE +KT+K+ R + L+P R YAVKA
Sbjct: 91 MRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123
>UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33;
Eukaryota|Rep: 60S ribosomal protein L35 -
Caenorhabditis elegans
Length = 123
Score = 87.8 bits (208), Expect = 8e-17
Identities = 47/93 (50%), Positives = 59/93 (63%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
LRV+KVTGG ASKLSKIRVVRK AR+ V +Q K LR Y + KYKP+ L KTRA
Sbjct: 31 LRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRA 90
Query: 278 MRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVKA 376
+R+ T HE +++ K+ R +AVKA
Sbjct: 91 IRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123
>UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellular
organisms|Rep: 60S ribosomal protein L35 - Aspergillus
fumigatus (Sartorya fumigata)
Length = 203
Score = 86.6 bits (205), Expect = 2e-16
Identities = 44/92 (47%), Positives = 56/92 (60%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
LRV K+ G +SK +I VRK+ ARV V + + LR YKN KY PL L TRA
Sbjct: 94 LRVQKIAAGASSKTQRIHDVRKSIARVLTVINANQRAQLRLFYKNKKYTPLDLRPRLTRA 153
Query: 278 MRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
+R+ TKHEA +KT K+ + + FP R YAVK
Sbjct: 154 LRRRLTKHEATLKTEKQRKKEIHFPQRKYAVK 185
>UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6;
Alveolata|Rep: 60S ribosomal protein L35 - Theileria
annulata
Length = 142
Score = 77.4 bits (182), Expect = 1e-13
Identities = 49/119 (41%), Positives = 61/119 (51%)
Frame = +2
Query: 20 VFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQK 199
VF ++DKS L +Q RV+KVT SKLSKI +VRKA A+V VY+Q+
Sbjct: 25 VFELRDKS-DAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQR 83
Query: 200 MKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVKA 376
K R YK PL L TRA RK T + +KT KE + P R YA+ A
Sbjct: 84 KKEEARKKYKKLSKTPLNLRPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYALLA 142
>UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=5;
Trypanosomatidae|Rep: 60S ribosomal protein L35,
putative - Leishmania major
Length = 127
Score = 64.1 bits (149), Expect = 1e-09
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYK---PLXLXAXK 268
LRV + TGG ++L +IR +RK+ AR+ V +Q + NL+ Y + K + P L
Sbjct: 32 LRVVQQTGGAETRLGRIRPIRKSIARILTVLNQNERSNLKMFYADRKLRCKTPKVLRTKL 91
Query: 269 TRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
T R A ++E KT +++R FP RVYAVK
Sbjct: 92 THRRRLALKENEKNRKTSRQMRQAHKFPKRVYAVK 126
>UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 218
Score = 63.3 bits (147), Expect = 2e-09
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
LRV KV GG +SK+ +I +RK ARV V +QK + NLR YK PL L A KTRA
Sbjct: 104 LRVQKVAGGSSSKILRINSLRKDIARVLTVMNQKQRANLREFYKGKSQIPLDLRAKKTRA 163
Query: 278 MRKAXTKHEAXIKTRK 325
+R+ + +++++
Sbjct: 164 IRRKLNQQRFAMRSQR 179
>UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L35 -
Cryptosporidium hominis
Length = 126
Score = 62.5 bits (145), Expect = 3e-09
Identities = 36/93 (38%), Positives = 50/93 (53%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
LRV + TG +KLS+I VVRK AR+ + Q+ +LR + K+ PL L TRA
Sbjct: 34 LRVIQSTGTAPNKLSRINVVRKGIARILTILSQRNIKSLREKHAGSKFMPLDLRKKLTRA 93
Query: 278 MRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVKA 376
R+A T +A T K + FP R +A+ A
Sbjct: 94 KRRALTPQQAKKMTVKASKKALNFPKRKFAIIA 126
>UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15
protein - Plasmodium falciparum
Length = 124
Score = 61.3 bits (142), Expect = 8e-09
Identities = 37/91 (40%), Positives = 48/91 (52%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
LR++K G A K SKI VRK ARV VY+QK K+ LR YKN K+KP L T+
Sbjct: 31 LRISKALGNSA-KNSKIHGVRKNVARVLTVYNQKRKMELRQLYKNKKFKPYNLRKKLTKN 89
Query: 278 MRKAXTKHEAXIKTRKEIRXKSLFPPRVYAV 370
R + + T ++ + FP R Y V
Sbjct: 90 KRLQLSPKQKAAMTLRQKKKVQNFPQRKYLV 120
>UniRef50_A0DBI8 Cluster: Chromosome undetermined scaffold_44, whole
genome shotgun sequence; n=9; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_44, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 125
Score = 60.5 bits (140), Expect = 1e-08
Identities = 32/92 (34%), Positives = 55/92 (59%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
LR KV+ G A KL +I +VRK A+ V +++ + +++N K+ P+ L KTRA
Sbjct: 33 LRTVKVSAGNAQKLGRIGLVRKRIAKFLTVINEQRRNSVKNAAKSSTKLPVDLRGKKTRA 92
Query: 278 MRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
+R+ T+ E KT+++ + + FP R +A+K
Sbjct: 93 IRQRLTRSERAQKTQRQWKRLNNFPLRKFALK 124
>UniRef50_UPI00002376D7 Cluster: PREDICTED: similar to 60S ribosomal
protein L35; n=1; Homo sapiens|Rep: PREDICTED: similar
to 60S ribosomal protein L35 - Homo sapiens
Length = 106
Score = 50.0 bits (114), Expect = 2e-05
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = +2
Query: 203 KVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVKA 376
K NL YK KYK L L KTRA+R+ +KHE + +K+ + + L P R AVKA
Sbjct: 43 KENLGKFYKGKKYKHLHLRPKKTRAVRRPLSKHEENLTIKKQQQSEQLSPVRKCAVKA 100
>UniRef50_Q7QRA8 Cluster: GLP_2_9191_9649; n=2; Giardia
intestinalis|Rep: GLP_2_9191_9649 - Giardia lamblia ATCC
50803
Length = 152
Score = 48.4 bits (110), Expect = 6e-05
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +2
Query: 98 LRVAKVTGG-VASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTR 274
LR K T G V ++++ RV +K ARV V +QK + R ++ ++ P T
Sbjct: 59 LRTMKATAGPVPERIARFRVCKKDVARVLTVINQKARDEARAAFEGAEHIPKTFRPRLTH 118
Query: 275 AMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
AMR T+ + + K ++ K FP YAVK
Sbjct: 119 AMRCQLTEKQKRLLPSKLMKRKLQFPKLKYAVK 151
>UniRef50_Q019M2 Cluster: DNAJ_NEIMB Chaperone protein dnaJ
sp|P63968|DNAJ_NEIMA Chaperone protein dnaJ
gb|AAF40528.1| dna; n=2; Ostreococcus|Rep: DNAJ_NEIMB
Chaperone protein dnaJ sp|P63968|DNAJ_NEIMA Chaperone
protein dnaJ gb|AAF40528.1| dna - Ostreococcus tauri
Length = 575
Score = 40.3 bits (90), Expect = 0.015
Identities = 29/69 (42%), Positives = 31/69 (44%)
Frame = -3
Query: 303 SCLVXALRIARVXLAXKXKGXXXXXXXXXXXXXXXFW*YTM*TRAIAFLTTRILDSLEAT 124
S LV A R+ARV K G W T+ AIA T IL SL
Sbjct: 418 SDLVKARRMARVFFLRKSSGWYFAPSYADRKDANCLWRITVRVCAIANRTCLILLSLPGA 477
Query: 123 PPVTLATRS 97
PPVTLATRS
Sbjct: 478 PPVTLATRS 486
>UniRef50_Q0D991 Cluster: Os06g0732000 protein; n=9; Oryza
sativa|Rep: Os06g0732000 protein - Oryza sativa subsp.
japonica (Rice)
Length = 290
Score = 37.1 bits (82), Expect = 0.14
Identities = 29/73 (39%), Positives = 39/73 (53%)
Frame = +2
Query: 95 MLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTR 274
+LRVA+VTGG +KLS I+ VR A Y +K K +L PL L KT
Sbjct: 137 VLRVARVTGGAPNKLSNIK-VRTALREAY----KKKKKSL---------LPLDLRPKKTC 182
Query: 275 AMRKAXTKHEAXI 313
A+R+ TKH+ +
Sbjct: 183 AIRRRLTKHQGML 195
>UniRef50_Q9UXG6 Cluster: Putative uncharacterized protein
ORF-c40_015; n=1; Sulfolobus solfataricus|Rep: Putative
uncharacterized protein ORF-c40_015 - Sulfolobus
solfataricus
Length = 360
Score = 34.7 bits (76), Expect = 0.76
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 116 TGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRAMRKA-- 289
T G+ S L K ++ IV+ QK+K +L +Y+N + K+R+ RKA
Sbjct: 183 TVGLNSMLHKFELIYTIDPDYIIVFDQKIKDSLPENYRNKAILLKSVNLHKSRSERKANR 242
Query: 290 XTKHEAXIKTRKEIRXKS 343
K+E K K I+ S
Sbjct: 243 IAKYERYFKEAKNIKTLS 260
>UniRef50_UPI0000EBD742 Cluster: PREDICTED: similar to 60S ribosomal
protein L35; n=1; Bos taurus|Rep: PREDICTED: similar to
60S ribosomal protein L35 - Bos taurus
Length = 98
Score = 34.3 bits (75), Expect = 1.0
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 98 LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPL 250
L + K+T V+SK SKI V K +R+ V +Q K NLR KYKPL
Sbjct: 17 LGIIKMTSSVSSKPSKILGVCKFISRLLTVVNQTQKENLR------KYKPL 61
>UniRef50_Q2KL02 Cluster: 60S ribosomal protein L35; n=1; Siniperca
chuatsi|Rep: 60S ribosomal protein L35 - Siniperca
chuatsi (Chinese perch)
Length = 57
Score = 32.7 bits (71), Expect = 3.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 242 KPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXK-SLFPPRV 361
KPL L KTR +R+ KHE ++T+K + L P++
Sbjct: 1 KPLDLRPKKTRVLRRRLNKHEESLRTKKTAEERPPLLDPQI 41
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,087,966
Number of Sequences: 1657284
Number of extensions: 2891165
Number of successful extensions: 6199
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6194
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -