Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0090
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   1.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   4.8  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   6.3  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 194 QKMKVNLRNHYKNXKYKPL 250
           +K   ++ N Y N KYKPL
Sbjct: 24  KKTVFDIPNDYLNDKYKPL 42


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 334 SDLFPRLDLCFVFSXSLAH 278
           +DL P  D C     +LAH
Sbjct: 57  TDLDPSADYCLFLEMTLAH 75


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 128 ASKLSKIRVVRKAXARVYIVYH 193
           + KLSKI+ ++ A   +  +YH
Sbjct: 128 SDKLSKIQTLKLAARYIDFLYH 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,485
Number of Sequences: 336
Number of extensions: 756
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)