Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0090
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    77   4e-15
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    37   0.006
12_02_0172 - 14891923-14892102,14892894-14892980                       29   1.1  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 48/112 (42%), Positives = 61/112 (54%), Gaps = 18/112 (16%)
 Frame = +2

Query: 95  MLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTR 274
           +LRVAKVTGG  +KLSKI+VVR + ARV  V  QK +  LR  YK     PL L   KTR
Sbjct: 30  LLRVAKVTGGAPNKLSKIKVVRTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKKTR 89

Query: 275 AMRKAXTKH------------------EAXIKTRKEIRXKSLFPPRVYAVKA 376
           A+R+  TKH                  +  +KT +E + +  FP R YA+KA
Sbjct: 90  AIRRRLTKHQLCYTCIRLLTFSMVAISQLSLKTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 29/73 (39%), Positives = 39/73 (53%)
 Frame = +2

Query: 95  MLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTR 274
           +LRVA+VTGG  +KLS I+ VR A    Y    +K K +L          PL L   KT 
Sbjct: 137 VLRVARVTGGAPNKLSNIK-VRTALREAY----KKKKKSL---------LPLDLRPKKTC 182

Query: 275 AMRKAXTKHEAXI 313
           A+R+  TKH+  +
Sbjct: 183 AIRRRLTKHQGML 195


>12_02_0172 - 14891923-14892102,14892894-14892980
          Length = 88

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +2

Query: 104 VAKVTGGVASKLSKIRVVRKAXARVY--IVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
           +A +  GV  K+S       A  R    +V H+ +++  RNH  + KY+   L     R+
Sbjct: 1   MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRSSLLGETPGRS 60

Query: 278 MRKAXTK 298
            R+A TK
Sbjct: 61  -RRAKTK 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,759,210
Number of Sequences: 37544
Number of extensions: 78844
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)