Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0090
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo...   105   9e-24
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi...   103   5e-23
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)           103   6e-23
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari...   102   1e-22
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari...   102   1e-22

>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
           ribosomal protein L35- cytosolic, Arabidopsis thaliana,
           PIR:T00549
          Length = 123

 Score =  105 bits (253), Expect = 9e-24
 Identities = 57/119 (47%), Positives = 75/119 (63%)
 Frame = +2

Query: 17  EVFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQ 196
           +V  ++DKS      N L+  +    +LRVAKVTGG  +KLSKI+VVRK+ A+V  V  Q
Sbjct: 5   KVHELRDKS-KTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQ 63

Query: 197 KMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
           K K  LR  YKN K  PL L   KTRA+R+  TKH+A +KT +E + +  FP R YA+K
Sbjct: 64  KQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIK 122


>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
           to 60S ribosomal protein L35 GB:AAC27830
          Length = 123

 Score =  103 bits (247), Expect = 5e-23
 Identities = 56/119 (47%), Positives = 75/119 (63%)
 Frame = +2

Query: 17  EVFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQ 196
           +V  +++KS      N L+  +    +LRVAKVTGG  +KLSKI+VVRK+ A+V  V  Q
Sbjct: 5   KVHELREKS-KSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQ 63

Query: 197 KMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
           K K  LR  YKN K  PL L   KTRA+R+  TKH+A +KT +E + +  FP R YA+K
Sbjct: 64  KQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122


>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
          Length = 123

 Score =  103 bits (246), Expect = 6e-23
 Identities = 56/119 (47%), Positives = 75/119 (63%)
 Frame = +2

Query: 17  EVFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQ 196
           +V  +++KS     S  L+  +    +LRVAKVTGG  +KLSKI+VVRK+ A+V  V  Q
Sbjct: 5   KVHELREKS-KADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQ 63

Query: 197 KMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
           K K  LR  YKN K  PL L   KTRA+R+  TKH+A +KT +E + +  FP R YA+K
Sbjct: 64  KQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122


>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score =  102 bits (244), Expect = 1e-22
 Identities = 57/119 (47%), Positives = 73/119 (61%)
 Frame = +2

Query: 17  EVFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQ 196
           +V  ++DKS     S  L+  +     LRVAKVTGG  +KLSKI+VVRK+ A+V  V  Q
Sbjct: 5   KVHELRDKS-KSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQ 63

Query: 197 KMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
           K K  LR  YKN K  PL L   KTRA+R+  TKH+A +KT +E +    FP R YA+K
Sbjct: 64  KQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122


>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score =  102 bits (244), Expect = 1e-22
 Identities = 57/119 (47%), Positives = 73/119 (61%)
 Frame = +2

Query: 17  EVFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQ 196
           +V  ++DKS     S  L+  +     LRVAKVTGG  +KLSKI+VVRK+ A+V  V  Q
Sbjct: 5   KVHELRDKS-KSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQ 63

Query: 197 KMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
           K K  LR  YKN K  PL L   KTRA+R+  TKH+A +KT +E +    FP R YA+K
Sbjct: 64  KQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,508,102
Number of Sequences: 28952
Number of extensions: 68667
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)