Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0089
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   1.1  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.4  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.6  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 PSSLSPTPIQL*RCALREHLRCDPVPRDP 345
           P + +PT   + RCALR+H + +  PR P
Sbjct: 94  PQTSAPTGPPIVRCALRKH-KPNRKPRTP 121


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 479 DDLAQRCAQYKKDGCH 526
           D++A RCA  +++ CH
Sbjct: 161 DEIAIRCAFLERENCH 176


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 260 GSPLCSPRRCPANACPLYRWIRQRPGYP 177
           G+P+C       NA  L +W   + G+P
Sbjct: 324 GNPICVQIPWDKNAEALAKWANGQTGFP 351


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 257 SPLCSPRRCPANACPLYRWIRQRPG 183
           SP+    R P   C +  W ++RPG
Sbjct: 513 SPISKKVRPPQVLCYITSWSQKRPG 537


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 247 HRGEPSSLSPTPIQ 288
           H GEP+ L+P  IQ
Sbjct: 217 HTGEPTDLTPEQIQ 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,396
Number of Sequences: 336
Number of extensions: 4064
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)