Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0089
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    30   0.40 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    29   0.94 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    28   1.2  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   1.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   2.9  
SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces po...    26   6.6  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.7  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   8.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.7  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 56  TKADHTSKAISATMSTYFQY----PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKR 223
           TK+   + A S   S+YF      P PE ++E  K+A++   P K   +A ES     K 
Sbjct: 453 TKSSSDNIAQSGPRSSYFPKKTVSPKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKV 512

Query: 224 LQDIGVENTEENRRRYRQL 280
            +++  + +  N   YR L
Sbjct: 513 PENL--KESHVNETPYRGL 529


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
 Frame = +1

Query: 490 PALRPVQEG---RLP-LRQVALRAEDRPXHPLVPSYPGKTLMCSPA------TPSSVRAS 639
           P LRP+ +    +LP +R ++LR    P  P +   P      +PA      TPSSV  S
Sbjct: 425 PRLRPMDDPSCVQLPSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLS 484

Query: 640 ASCRLSSPKSYLMASTTWTAPQK*TEGRSGRR 735
           +   ++S   +  AS +   P + +  R  R+
Sbjct: 485 SLSNVNSSMPHKPASQSNVGPVRISSNRRSRK 516


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 652 LSSPKSYLMASTTWTAPQK*TEGRSG 729
           L SPKSYL +S T++ P+  TE  +G
Sbjct: 146 LISPKSYLTSSKTFSYPKAPTESTNG 171


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 230 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 409
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 410 GIK 418
            ++
Sbjct: 552 PLR 554


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 733 GGQNDLQFTFGARSRSCS-PSGKTSGSTIGT 644
           GG N   F+FGA + + + PSG   GST  T
Sbjct: 428 GGNNSSNFSFGANNNAATKPSGFGFGSTTTT 458


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 287 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT 466
           S +A    NI GV+    +  ++  + + L +L EK G    I          GSE   +
Sbjct: 349 SYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSS 399

Query: 467 -TQGLDDLAQRCAQYKKDGCHFAKW 538
            T+   D+A+  A + K+G +F+ W
Sbjct: 400 ITEKTRDIAKNVATWLKNGENFSSW 424


>SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 496 LRPVQEGRLPLRQVALRAEDRPXHPLVPSYPGKTLMCSPAT 618
           ++P+ +    LRQ  L+  + P H L  + P  +LM SP T
Sbjct: 18  IQPLHQESATLRQQVLQKHELPKHALNVASPTDSLM-SPCT 57


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 386 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 493
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 579 WYEGVXRPIFSTQRHLAKWQPSFL 508
           W E   R + +T+R L KW   F+
Sbjct: 223 WAEDTPRELVTTRRELLKWTVEFM 246


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 22/76 (28%), Positives = 29/76 (38%)
 Frame = +1

Query: 469  PGSGRPRPALRPVQEGRLPLRQVALRAEDRPXHPLVPSYPGKTLMCSPATPSSVRASASC 648
            PG G   P+  P   G       A         P  PSY   +   SP +PS    S S 
Sbjct: 1549 PGYGLTSPSYSPSSPGYST--SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1606

Query: 649  RLSSPKSYLMASTTWT 696
              +SP SY   S +++
Sbjct: 1607 SATSP-SYSPTSPSYS 1621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,896
Number of Sequences: 5004
Number of extensions: 64550
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)