Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0089
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 232 2e-61
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 232 2e-61
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 183 1e-46
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 183 1e-46
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 183 1e-46
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 4.7
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 4.7
AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical ... 29 4.7
AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical ... 28 6.2
Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 28 8.1
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 28 8.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 8.1
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 232 bits (567), Expect = 2e-61
Identities = 110/166 (66%), Positives = 132/166 (79%)
Frame = +2
Query: 95 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 274
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 275 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 454
QLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+
Sbjct: 61 QLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTI 120
Query: 455 DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRXTPSYQAIQE 592
E TTQGLDDL RCAQYKKDG FAKWRCV KI TPS A++E
Sbjct: 121 GEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALKE 166
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/52 (57%), Positives = 35/52 (67%)
Frame = +3
Query: 555 SAATPPRTKLSRKNANVLARYAFICQSQRIVPIVEPEVLPDGEHDLDRAPKV 710
S+ TP T L +N LARYA ICQ +VPIVEPE+LPDGEH L R K+
Sbjct: 155 SSTTPSVTALKEIASN-LARYASICQQNGLVPIVEPEILPDGEHCLARGQKI 205
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 232 bits (567), Expect = 2e-61
Identities = 110/166 (66%), Positives = 132/166 (79%)
Frame = +2
Query: 95 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 274
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 275 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 454
QLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+
Sbjct: 61 QLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTI 120
Query: 455 DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRXTPSYQAIQE 592
E TTQGLDDL RCAQYKKDG FAKWRCV KI TPS A++E
Sbjct: 121 GEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALKE 166
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +3
Query: 555 SAATPPRTKLSRKNANVLARYAFICQSQRIVPIVEPEVLPDGEHDLDRAPKV 710
S+ TP T L +N+ +RYA ICQ +VPIVEPE+LPDGEH L R K+
Sbjct: 155 SSTTPSVTALKEIASNLGSRYASICQQNGLVPIVEPEILPDGEHCLARGQKI 206
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 183 bits (445), Expect = 1e-46
Identities = 92/158 (58%), Positives = 114/158 (72%)
Frame = +2
Query: 119 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 298
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 299 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 478
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 479 DDLAQRCAQYKKDGCHFAKWRCVLKIGRXTPSYQAIQE 592
D LA+R A +KK GC FAKWRCVL IG TPS+ + E
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLE 169
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +3
Query: 591 KNANVLARYAFICQSQRIVPIVEPEVLPDGEHDLDRAPKV 710
+NANVLARYA ICQ+ +VPIVEPEVL DGEHDL RA KV
Sbjct: 169 ENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKV 208
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 183 bits (445), Expect = 1e-46
Identities = 92/158 (58%), Positives = 114/158 (72%)
Frame = +2
Query: 119 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 298
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 299 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 478
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 479 DDLAQRCAQYKKDGCHFAKWRCVLKIGRXTPSYQAIQE 592
D LA+R A +KK GC FAKWRCVL IG TPS+ + E
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLE 169
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +3
Query: 591 KNANVLARYAFICQSQRIVPIVEPEVLPDGEHDLDRAPKV 710
+NANVLARYA ICQ+ +VPIVEPEVL DGEHDL RA KV
Sbjct: 169 ENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKV 208
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 183 bits (445), Expect = 1e-46
Identities = 92/158 (58%), Positives = 114/158 (72%)
Frame = +2
Query: 119 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 298
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 299 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 478
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 479 DDLAQRCAQYKKDGCHFAKWRCVLKIGRXTPSYQAIQE 592
D LA+R A +KK GC FAKWRCVL IG TPS+ + E
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLE 169
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +3
Query: 591 KNANVLARYAFICQSQRIVPIVEPEVLPDGEHDLDRAPKV 710
+NANVLARYA ICQ+ +VPIVEPEVL DGEHDL RA KV
Sbjct: 169 ENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKV 208
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +2
Query: 125 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 268
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 747 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 806
Query: 269 YRQLLFSSDA 298
Y QL+ SD+
Sbjct: 807 YEQLVSESDS 816
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +2
Query: 125 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 268
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 269 YRQLLFSSDA 298
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +2
Query: 125 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 268
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 269 YRQLLFSSDA 298
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical
protein R02F11.2 protein.
Length = 721
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 560 GRSSARNATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 453
GR N G RPS +G AG RP GWC+++
Sbjct: 253 GRPRPGNGGGGGGVRPSNSGCDAGWRRFNRPSGGWCVKV 291
>AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical
protein Y41D4A.8 protein.
Length = 347
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 362 DGTPLVSLLEKKGII--PGIKVDKGVVPLFGSEDECT 466
D +PLVS+L G+I P + + VPLF ED CT
Sbjct: 10 DPSPLVSVL---GLIKSPDLMIGSTEVPLFEEEDMCT 43
>Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical
protein T26E3.1 protein.
Length = 233
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -2
Query: 542 NATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 453
N G RP+ G AG RP+ GWC+R+
Sbjct: 48 NGNGNGGGRPTNGGCDAGWRRFNRPNGGWCVRV 80
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 523 PLRQVALRAEDRPXHPLVPSYPGKTLMCSPATPSSVRASASCRLSSPKSYLMASTTWTAP 702
PL+ + R L S+ T + SP TP + ASA LSS S +++++ P
Sbjct: 933 PLKNKVFDFDIRTSDDLAKSFVDGTALLSPMTPMTPGASAFRHLSSRDSTQSSTSSFDFP 992
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 523 PLRQVALRAEDRPXHPLVPSYPGKTLMCSPATPSSVRASASCRLSSPKSYLMASTTWTAP 702
PL+ + R L S+ T + SP TP + ASA LSS S +++++ P
Sbjct: 933 PLKNKVFDFDIRTSDDLAKSFVDGTALLSPMTPMTPGASAFRHLSSRDSTQSSTSSFDFP 992
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 523 PLRQVALRAEDRPXHPLVPSYPGKTLMCSPATPSSVRASASCRLSSPKSYLMASTTWTAP 702
PL+ + R L S+ T + SP TP + ASA LSS S +++++ P
Sbjct: 168 PLKNKVFDFDIRTSDDLAKSFVDGTALLSPMTPMTPGASAFRHLSSRDSTQSSTSSFDFP 227
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 516 SFLYWAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSRETRGVPSSA 355
S L +Q +S P VV SSS +S T ST+ P +S + PS++
Sbjct: 450 STLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTS 503
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,557,449
Number of Sequences: 27780
Number of extensions: 404097
Number of successful extensions: 1377
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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