Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0088
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   2.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.0  

>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 246 QSYITI*SSSLHEINVSPLGEKSILLILSVFSRNTLATLK 127
           Q Y+T+ S SL  I  S +     ++I++++S+N    +K
Sbjct: 183 QVYMTLVSLSLFIIPASIIATCYAIIIITIWSKNAKGFIK 222


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 270 RSTVKNTGSI*YILHMPKTLQFTVPP 347
           R+T+KN  +  Y +  PK+   + PP
Sbjct: 257 RTTLKNNRASPYPMQRPKSASLSPPP 282


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 444 DKHIVTTFFVCPGKYLMYLLS*RDKYRIVSSTLVE 340
           +KH+ TT+   P ++   LL     +R +S   +E
Sbjct: 341 NKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIE 375


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,997
Number of Sequences: 336
Number of extensions: 4628
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)