Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0088
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.76 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 296 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNK-YIRYFP 409
           ++IH       +IH++  V    R  S HDN  Y  Y P
Sbjct: 574 EMIHNAQVNKRSIHNNYPVHTFGRLTSKHDNSLYDEYIP 612


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 328 SVFGMC-KMYQIDPVFFTVDRNHLCSFFTIVYNDLIIFAT*NQCL 197
           +VF +C   Y +  +++ +DRN        +   L +FA  N C+
Sbjct: 267 AVFFICWTPYYVMSLWYWIDRNSAYKIDQRIQKGLFLFACTNSCM 311


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 500 PTVVMFCLMIQIKMCLQPGINTLSQ 426
           P ++  CL    ++ +QPG N LS+
Sbjct: 6   PWLLSICLFGLQEIAIQPGSNALSR 30


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 245 CEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSST 346
           C    ++   NS K+  D   ++H  +   HSST
Sbjct: 212 CPPAPRLTNSNSIKHESDNSDYSHTTDENRHSST 245


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 158  TDKINSIDFSPNGETLISCSEDDQIVIYDCE 250
            TD   +I   P+GE ++S  +      Y C+
Sbjct: 1355 TDSTRNIQILPSGELMLSNLQSQDGGDYTCQ 1385


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 158  TDKINSIDFSPNGETLISCSEDDQIVIYDCE 250
            TD   +I   P+GE ++S  +      Y C+
Sbjct: 1351 TDSTRNIQILPSGELMLSNLQSQDGGDYTCQ 1381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,216
Number of Sequences: 438
Number of extensions: 5011
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)