Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0086
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    30   0.28 
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   2.0  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   4.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   6.0  

>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +2

Query: 68  GITLTTSTMARTMMF*KT*NLNCRKMKW 151
           G+T+ TS+MART+   +  +LNC+K++W
Sbjct: 255 GLTVWTSSMARTIQTAR--HLNCQKLEW 280


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 312 VLISIGFVESIFVPYSICPVKYHGLSQRINGYCGYLSDIQRLL 184
           +L S GF +S   P     V  + LSQ  N  C  +S  QRL+
Sbjct: 282 ILPSAGFWQSFLAPKFFDAVLAYCLSQLFNWSCQNISSYQRLV 324


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 342 CIFNYRSLVEVLISIGFVESIFVP 271
           C +NY  L+ +   +GF ES  +P
Sbjct: 186 CAYNYGGLIALRFFLGFTESCLLP 209


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +1

Query: 172 KDWPQQSLNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTI 345
           K + Q SL+   +TAV ++++ + ++    D +     FN+ N   + D G  +   I
Sbjct: 480 KSFGQSSLSGKPVTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAI 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,054
Number of Sequences: 5004
Number of extensions: 40944
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)