Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0086
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0216 + 10370531-10371922,10378656-10378808 30 1.5
02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007... 30 1.5
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 29 3.5
07_01_1086 - 9930311-9931993 29 3.5
07_01_1081 + 9831606-9832499 29 3.5
10_01_0300 - 3257584-3258825 29 4.7
08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417 29 4.7
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 29 4.7
03_05_0186 + 21731294-21732277 28 8.2
>05_03_0216 + 10370531-10371922,10378656-10378808
Length = 514
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +1
Query: 91 YGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRV 270
Y A DV + ++++ K +L+P ++ +W ++ + + IT + S G I+ DR+
Sbjct: 154 YVAVCDVCQRVKAEHQKPASLLQPLKIPEWKREEIGMDFITGLPRTSSGHDSIWVIVDRL 213
>02_05_0577 -
30100084-30100251,30100474-30100548,30100631-30100755,
30101538-30101609,30102016-30102108,30102333-30102419,
30103049-30103135,30103448-30103522,30104142-30104238
Length = 292
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 163 QEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDK 321
Q++ P+ SL + + + S P H+ DR+++E E +Y+ FD+
Sbjct: 223 QQIIQSPRVSLQANENSMILATSRFSPQESHQHDRLYEEQISTEHWSYEEFDR 275
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 91 YGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRV 270
Y A DV + ++++ K +L+P ++ +W + + + IT + S G I+ DR+
Sbjct: 1385 YVALCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRL 1444
>07_01_1086 - 9930311-9931993
Length = 560
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 91 YGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRV 270
Y A DV + ++++ K +L+P ++ +W + + + IT + S G I+ DR+
Sbjct: 168 YVAVCDVCQRVKAEHQKPASLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRL 227
>07_01_1081 + 9831606-9832499
Length = 297
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 91 YGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRV 270
Y A DV + ++++ K +L+P ++ +W + + + IT + S G I+ DR+
Sbjct: 73 YVALCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRL 132
>10_01_0300 - 3257584-3258825
Length = 413
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 91 YGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRV 270
Y A DV + ++++ K +L+P ++ +W + + + IT + S G I+ DR+
Sbjct: 21 YVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRL 80
>08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417
Length = 447
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 91 YGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRV 270
Y A DV + ++++ K +L+P ++ +W + + + IT + S G I+ DR+
Sbjct: 154 YVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRL 213
>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 91 YGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRV 270
Y A DV + ++++ K +L+P ++ +W + + + IT + S G I+ DR+
Sbjct: 1047 YVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRL 1106
>03_05_0186 + 21731294-21732277
Length = 327
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 91 YGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRV 270
Y A DV + ++++ K +L+P ++ +W + + + IT + S G I+ DR+
Sbjct: 21 YVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRMSSGHDSIWVIVDRL 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,867
Number of Sequences: 37544
Number of extensions: 251721
Number of successful extensions: 569
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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