Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0086
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    82   3e-16
U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical pr...    58   6e-09
U51999-3|AAA96084.1|  306|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U28943-10|AAA68362.1|  329|Caenorhabditis elegans Dehydrogenases...    28   7.4  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 46/127 (36%), Positives = 71/127 (55%)
 Frame = +1

Query: 79  DYFNYGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHR 258
           +YF YG   D  + +E       V  + +E+      S  +GQ++ +++N  G  V FHR
Sbjct: 23  EYF-YG---DEQQPIEEGAENSAVFEQDRELIGLFNPSKEIGQVSGLAVNKNGHIVAFHR 78

Query: 259 ADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAYIFYMPXGLTLDHHD 438
           + RVWDE +FN+   + N D G I   TI ++      V+  +GA +FYMP GLT+D++ 
Sbjct: 79  SGRVWDEKSFNDHETF-NKDLGVINNKTIAIIS-REKKVIDEFGAGLFYMPHGLTIDNNG 136

Query: 439 NVWVTDV 459
           + WVTDV
Sbjct: 137 DYWVTDV 143


>U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical
           protein T19B4.1 protein.
          Length = 663

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = +1

Query: 193 LNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLD-PGSG 369
           + +GQ+  ++ N+  Q ++F RA RVWD +TF+  N     DK PI +  ILV+   G+ 
Sbjct: 355 VKLGQVAGLAFNNEQQLLVFQRAGRVWDASTFDNYNIL--LDKKPIADPVILVISYSGNQ 412

Query: 370 SVL-HSWGAYIFYMPXGLTLDHHDNVWVTDV 459
           + L    G   FY+P G+ +D    V+ TDV
Sbjct: 413 TKLERKLGGGQFYLPHGIYVDKDGFVYTTDV 443


>U51999-3|AAA96084.1|  306|Caenorhabditis elegans Hypothetical
           protein C43H6.7 protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -2

Query: 375 NGAATRVKNKNCIFNYRSLVEVLISIGFVESIFVPYSICPVKYHGLSQRINGY 217
           N +A +  NK    N+R+ + +  +  F + + +P ++ PVKY  +S + + Y
Sbjct: 251 NTSARKRLNKGFKANWRNFLGLRRNRTFFKCVIMPTALPPVKYEDISPKSDAY 303


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 46  NCEPEAVRDNFDYFNYGANDDVLKNLESQLSKDEVVLRPQEV 171
           N + E +  N +Y+ + + DD L +++    +   + RP+EV
Sbjct: 178 NNKTEKLETNAEYYGFKSYDDSLYDIQPNTKRPAPLYRPEEV 219


>U28943-10|AAA68362.1|  329|Caenorhabditis elegans Dehydrogenases,
           short chain protein7 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/50 (20%), Positives = 24/50 (48%)
 Frame = +1

Query: 196 NVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTI 345
           N+ Q  + ++   G P + + + + WD N  +E   Y+   +   ++D +
Sbjct: 257 NISQGASTTVYCAGHPEVANVSGKYWDSNWDDEKGLYEEVARDEQLQDAL 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,753,707
Number of Sequences: 27780
Number of extensions: 229156
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)