Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0086
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52640.2 68416.m05800 nicastrin-related contains weak similar...    30   1.3  
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.3  
At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase, p...    29   2.2  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    29   3.0  
At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...    28   6.8  

>At3g52640.2 68416.m05800 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 705

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 306 ISIGFVESIFVPYSICPVKYHGL---SQRINGYCGYLSDIQRLLW 181
           +S   V+    P + CP  Y G+         Y GY+ D+ R LW
Sbjct: 527 LSCNLVKDYISPTNTCPGNYAGVILGEPSSKPYLGYVGDVSRFLW 571


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 306 ISIGFVESIFVPYSICPVKYHGL---SQRINGYCGYLSDIQRLLW 181
           +S   V+    P + CP  Y G+         Y GY+ D+ R LW
Sbjct: 498 LSCNLVKDYISPTNTCPGNYAGVILGEPSSKPYLGYVGDVSRFLW 542


>At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase,
           putative similar to adventitious rooting related
           oxygenase ARRO-1 from Malus x domestica, gi|3492806;
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily
          Length = 312

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 97  ANDDVLKNLESQLSKDEVVLRPQEVKDWPQQ-SLNVGQITAVSINSLGQPVIFH 255
           A DD+ ++L  +L++   V+ P  ++ WP Q  +N       S+  LG  VI H
Sbjct: 124 ATDDLARSLARRLAESYGVVEPNFLRGWPSQFRMNKYHFKPDSVGKLG--VILH 175


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +3

Query: 81  LLQLWRER*CFEKLRISIVER*SGLETSRGQRLATAIFECRTNNRSIH*FFGTAR 245
           L+ L  E+  F  L +SI+E+  G E  RG+ L    F C+ + R +  FF  AR
Sbjct: 831 LVTLTEEKNLFPSL-LSIIEQ--GTEVLRGKALLFVAFLCKNSRRWLTNFFCNAR 882


>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 211 TAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTI 345
           TAV I + G  +  HR + +     FNES  Y   D G  V +T+
Sbjct: 196 TAVIIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGDTGHPVFETV 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,886,903
Number of Sequences: 28952
Number of extensions: 208755
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)