Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0081
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0485 - 8808139-8808618                                           32   0.56 
03_02_0484 + 8805053-8805538                                           32   0.56 
03_02_0483 - 8804021-8804485                                           32   0.56 
03_02_0478 + 8775892-8776377                                           32   0.56 
01_01_0229 - 1943473-1943922                                           30   2.3  
01_01_0231 + 1951047-1951499                                           29   3.0  
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           29   3.9  
06_02_0225 + 13257655-13260693                                         29   5.2  
01_01_0227 + 1933247-1933699                                           29   5.2  

>03_02_0485 - 8808139-8808618
          Length = 159

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHE 473
           RF  P  +K E+ +A   ENG+LTV VPK E
Sbjct: 117 RFRLPENTKPEQIKASM-ENGVLTVTVPKEE 146


>03_02_0484 + 8805053-8805538
          Length = 161

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHE 473
           RF  P  +K E+ +A   ENG+LTV VPK E
Sbjct: 119 RFRLPENTKPEQIKASM-ENGVLTVTVPKEE 148


>03_02_0483 - 8804021-8804485
          Length = 154

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHE 473
           RF  P  +K E+ +A   ENG+LTV VPK E
Sbjct: 112 RFRLPENTKPEQIKASM-ENGVLTVTVPKEE 141


>03_02_0478 + 8775892-8776377
          Length = 161

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHE 473
           RF  P  +K E+ +A   ENG+LTV VPK E
Sbjct: 119 RFRLPDNAKPEQIKASM-ENGVLTVTVPKEE 148


>01_01_0229 - 1943473-1943922
          Length = 149

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHEL 476
           RF  P  +K ++ +A   ENG+LTV VPK E+
Sbjct: 107 RFRLPENAKVDQVKASM-ENGVLTVTVPKAEV 137


>01_01_0231 + 1951047-1951499
          Length = 150

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHEL 476
           RF  P  +K ++ +A   ENG+LTV VPK E+
Sbjct: 108 RFRLPENAKVDQVKA-GMENGVLTVTVPKAEV 138


>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHEL 476
           RF  P  +K ++ +A   ENG+LTV VPK E+
Sbjct: 108 RFRLPENAKVDQVKAGL-ENGVLTVTVPKAEV 138


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 379 MNEMIRQELLYVAGFLMLSFDRDVFVFHC 293
           MN M+R   +   G  ML+FD D ++++C
Sbjct: 474 MNAMVRASAILSNGPFMLNFDCDHYIYNC 502


>01_01_0227 + 1933247-1933699
          Length = 150

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHE 473
           RF  P G++ ++  A   +NG+LTV VPK E
Sbjct: 108 RFRLPRGARVDQVSASM-DNGVLTVTVPKEE 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,334,622
Number of Sequences: 37544
Number of extensions: 222326
Number of successful extensions: 380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)