Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0081
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       36   0.027
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.027
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 36   0.027
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 36   0.027
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   33   0.19 
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   33   0.33 
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 31   1.00 

>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 IANDXKLEX-NMNVKRFXPDEIKVTVKNKYITVEGKHKEAG 343
           +AN+ KLE   ++V+ + P+EI   V+N ++ V+G+H   G
Sbjct: 1   MANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEG 41



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 254 MNVKRFXPDEIKVTVKNKYITVEGKHKEAG 343
           ++V+ + P+EI   V+N ++ V+G+H   G
Sbjct: 246 LDVREYRPEEISFKVENGFVKVQGRHVNEG 275


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 IANDXKLEX-NMNVKRFXPDEIKVTVKNKYITVEGKHKEAG 343
           +AN+ KLE   ++V+ + P+EI   V+N ++ V+G+H   G
Sbjct: 1   MANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEG 41


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 IANDXKLEX-NMNVKRFXPDEIKVTVKNKYITVEGKHKEAG 343
           +AN+ KLE   ++V+ + P+EI   V+N ++ V+G+H   G
Sbjct: 1   MANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEG 41


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 IANDXKLEX-NMNVKRFXPDEIKVTVKNKYITVEGKHKEAG 343
           +AN+ KLE   ++V+ + P+EI   V+N ++ V+G+H   G
Sbjct: 1   MANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEG 41


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 254 MNVKRFXPDEIKVTVKNKYITVEGKHKEAGD 346
           ++VK + P+EI + V++  I ++GKHK  G+
Sbjct: 45  LDVKNYRPEEISLKVEHGRIKIDGKHKSEGE 75


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 230 NDXKLEX-NMNVKRFXPDEIKVTVKNKYITVEGKHKEAG 343
           N+ KLE   ++V+ + P+EI   V+N  + V+G+H   G
Sbjct: 4   NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEG 42



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 227 ANDXKLEXNMNVKRFXPDEIKVTVKNKYITVEGKHK 334
           + D K    M+VK F P+ IKV V    + V   H+
Sbjct: 94  SKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHE 129


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 254 MNVKRFXPDEIKVTVKNKYITVEGKHKEAGD 346
           ++VK + P+EI   V+N  + V+G+H   G+
Sbjct: 12  LDVKEYRPEEISFKVENGVVKVQGRHVNEGE 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,651
Number of Sequences: 59808
Number of extensions: 261705
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)