Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0081
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    32   0.47 
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    30   1.9  
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    29   2.5  
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    29   3.3  
At5g37670.1 68418.m04537 15.7 kDa class I-related small heat sho...    29   4.4  
At1g08560.1 68414.m00949 syntaxin-related protein KNOLLE (KN) / ...    28   5.8  
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    28   7.6  

>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPK 467
           RF  P  +K EE +A   ENG+LTV VPK
Sbjct: 117 RFRLPENAKMEEVKATM-ENGVLTVVVPK 144


>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPK 467
           RF  P  +K EE +A   ENG+L+V VPK
Sbjct: 115 RFRLPENAKMEEIKASM-ENGVLSVTVPK 142


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHE 473
           RF  P   K ++ +A   ENG+LTV VPK E
Sbjct: 111 RFRLPENVKMDQVKAAM-ENGVLTVTVPKAE 140


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPK 467
           RF  P  +K EE +A   ENG+L+V VPK
Sbjct: 114 RFRLPENAKVEEVKASM-ENGVLSVTVPK 141


>At5g37670.1 68418.m04537 15.7 kDa class I-related small heat shock
           protein-like (HSP15.7-CI) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 137

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 375 FMRFVXPPGSKQEEXRAIYKENGILTVXVPK 467
           F+R +  P + + +    Y ENG+LTV VPK
Sbjct: 89  FLRRIELPENVKVDQVKAYVENGVLTVVVPK 119


>At1g08560.1 68414.m00949 syntaxin-related protein KNOLLE (KN) /
           syntaxin 111 (SYP111) identical to SP|Q42374
           Syntaxin-related protein KNOLLE (Syntaxin 111)
           (AtSYP111) {Arabidopsis thaliana}; BAC F22O13 has a
           deletion of a cytosine at position 7887
          Length = 310

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 281 EIKVTVKNKYITVEGKHKEAGDIKKFLTNH 370
           E K TV+ +Y TV G+H     I+K +T++
Sbjct: 160 EYKETVERRYFTVTGEHANDEMIEKIITDN 189


>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 381 RFVXPPGSKQEEXRAIYKENGILTVXVPKHE 473
           +F  P   K ++ +A   ENG+LTV VPK E
Sbjct: 113 KFKLPENVKMDQVKASM-ENGVLTVTVPKVE 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,434
Number of Sequences: 28952
Number of extensions: 182616
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)