Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0077
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   5.1  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   6.8  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.0  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 397 EDLQRRHDDEQH--DELITRHC 456
           ED Q RH+DE+H    LI  HC
Sbjct: 916 EDPQSRHNDERHLYSVLIDGHC 937


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 239 DMASFFTSNMKFADVMIYRKDL-GMSNTSKTVDTSEMVMMKDDLTY-LDSDMLVKR 400
           D   +FT++ +FAD++I +       NTS     S    +K D++Y   SD+ VKR
Sbjct: 45  DRTGYFTNSTRFADLIIEKATFTEFGNTS-----SFPKFLKLDISYETSSDLEVKR 95


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/32 (25%), Positives = 22/32 (68%)
 Frame = -1

Query: 288 IITSANFMLLVKKLAMSIGLSNGYPRGMVEIH 193
           ++++A  +L  + + M++GL NG+  G++ ++
Sbjct: 301 VLSTAFKLLCTEPIIMALGLYNGFAYGLIFLY 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,924
Number of Sequences: 5004
Number of extensions: 35654
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)