Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0077
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0214 - 1615519-1616775 33 0.18
03_04_0055 + 16891212-16891848,16893166-16893206 30 1.3
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 30 1.3
08_02_0311 - 15635165-15635590,15635777-15638698 29 2.2
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 28 3.9
02_02_0712 + 13200174-13200761,13201966-13202616 28 5.2
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568 27 6.8
01_06_0622 + 30669015-30669279,30669467-30670419 27 6.8
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 27 9.0
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 27 9.0
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 27 9.0
>05_01_0214 - 1615519-1616775
Length = 418
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 325 DRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 432
D GH G GH G H H G + H+D++H
Sbjct: 183 DHGH-GHGHGHGHGHSHDHDHGGSDHDHHHHEDQEH 217
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 301 PRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 438
P + QQ H+ G G H PG G G +DE DE
Sbjct: 175 PPPQQQQQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHDEDEDEDE 220
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 316 HQQDRGHLGDGHDEGRSHLP----GLGHAGQEDLQRRHDDEQHDE 438
H ++ H + DE + GLG ++DL++ HD E DE
Sbjct: 166 HGMEKDHTKEEKDESNKEMDDSEKGLGKEEKDDLEKDHDKEDRDE 210
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 313 EHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 435
EH + + D +G+ HLPG G G + L R+ + + D
Sbjct: 184 EHYKIGEYADDDPHDGKLHLPGPGGGGNKSLLARNQNGEFD 224
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 295 KRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 438
K RH + DG DE R + H +E+ + RHD + H +
Sbjct: 202 KSKRHHSSENSDSEESDGRDERRKSVQASEHK-REEKRSRHDKKDHGQ 248
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 298 FSVDHYVSELHVASEEARHVNRSVKWISERHGG 200
++ +HY+ +R NRSV W+ HGG
Sbjct: 317 YADEHYLPTFLGIRHPSRVTNRSVTWVDWSHGG 349
>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
Length = 605
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 231 LSNGYPRGMVEIHELQRQAQRSFIMVMSNVG 139
++ G RG ++ LQ A RSF++ + NVG
Sbjct: 266 INGGGKRGTIQAGALQAGAVRSFLVYVDNVG 296
>01_06_0622 + 30669015-30669279,30669467-30670419
Length = 405
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -1
Query: 273 NFMLLVKKLAMSIGLSNGYPRGMVEIHELQRQAQ 172
N + LV+++ +++G+ GY +G+V E+Q +A+
Sbjct: 327 NKVFLVEEMRLAVGVE-GYDKGIVTAEEIQEKAR 359
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 165 RTVVLVAGAHVSPPCLSDIH 224
R + +A AH++PPCL+ +H
Sbjct: 377 RYLTHIARAHMAPPCLARVH 396
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 5/21 (23%)
Frame = -2
Query: 170 GPSSWSCPM-----WARAYRC 123
GP+ WSCPM WA+ +C
Sbjct: 211 GPNDWSCPMCGNINWAKRMKC 231
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 240 SIGLSNGYPRGMVEIHELQRQAQRSFIMVMSNVGKS 133
S+ LSN Y R +V++H ++ +S + +NVG S
Sbjct: 789 SVSLSN-YQRKLVDVHRDAQKLMQSLDGIQANVGSS 823
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,941,979
Number of Sequences: 37544
Number of extensions: 277792
Number of successful extensions: 936
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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