Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0077
(519 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7) 30 1.00
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6) 29 1.7
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 29 2.3
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 29 3.0
SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0) 28 4.0
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 5.3
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 28 5.3
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018) 27 7.0
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4) 27 7.0
SB_10968| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_21332| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
Length = 461
Score = 30.3 bits (65), Expect = 1.00
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 385 VRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVASEEARHVNRSV 227
+ +G ++ DH+ G+H + + VDH + +H +E HV R V
Sbjct: 140 IETDMGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIREV 191
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 385 VRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVASEEARHV-NRSVKWISER 209
+ +G ++ DH+ G+H + + VDH + +H +E HV + V + E
Sbjct: 79 IETDMGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIKQKVGHVIEV 137
Query: 208 HGGDT 194
H +T
Sbjct: 138 HKIET 142
>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
Length = 192
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +1
Query: 235 D*HGELLH*QHEVR*---RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGH---AGQ 396
D H E + +HE R RND ++ RH + D D HDE R+ H +
Sbjct: 121 DRHDEERNNEHEDRHDKGRNDDEEEDRHDGERNDDEE-EDRHDEERNDDEEDRHDEKRNE 179
Query: 397 EDLQRRHDDEQHD 435
++ + RHD+++HD
Sbjct: 180 DEEEDRHDEDRHD 192
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 280 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQR--RHDDEQHDELITRH 453
RN+ + RH E + D DGHDE R++ H + + + RHD+E+++E +H
Sbjct: 43 RNN-EHEDRHDEERNDEDE--DGHDEERNNEHEDRHDEERNNEHEDRHDEERNNEEEDKH 99
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 235 D*HGELLH*QHEVR*RNDLQKRPRHVE-HQQDRGHLG-DGHDEGRSHLPGLGH---AGQE 399
D H E + +HE R +D ++ H + H ++R + D HDE R++ H E
Sbjct: 61 DGHDEERNNEHEDR--HDEERNNEHEDRHDEERNNEEEDKHDEERNNEHEDRHDEERNNE 118
Query: 400 DLQRRHDDEQHDELITRH 453
D + RHD+E+++E RH
Sbjct: 119 D-EDRHDEERNNEHEDRH 135
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 280 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELITRH 453
R+D ++ H E + D+G D +E R G ++ + RHD+E++D+ RH
Sbjct: 122 RHDEERNNEH-EDRHDKGR-NDDEEEDRHD----GERNDDEEEDRHDEERNDDEEDRH 173
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 349 HDEGRSHLPGLGHA-GQEDLQRRHD--DEQH 432
H+EG+ LPG H+ GQ +Q+R + EQH
Sbjct: 789 HEEGQQQLPGGNHSPGQHHMQQRREALPEQH 819
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/84 (26%), Positives = 31/84 (36%)
Frame = +2
Query: 128 GMLLPTLDMTMMKDRCACRWSSCISTMPLGYPFDRPIDMASFFTSNMKFADVMIYRKDLG 307
GM P MT D + PL + S S D+MIY +DL
Sbjct: 2038 GMATPIDSMTKQVDSMSIDTVKYTPLAPLACQPATASRLNSAGRSRRNSNDLMIYGQDLV 2097
Query: 308 MSNTSKTVDTSEMVMMKDDLTYLD 379
++T +E+ + K D Y D
Sbjct: 2098 CTDTYTAQQDNELTVFKGDWVYAD 2121
>SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 64 APRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLH 204
A R+D GD DV+ +VA H HDHD + L+L YL+
Sbjct: 21 ASRHD--HGDGDVKIKVASRHD---PDKRHDHDNDTITLALRSRYLY 62
>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
Length = 2232
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = -1
Query: 435 IMLLIIMTSL*VLLTSMSESR*VRSSFIMTISEVSTVLLVFDMPRSFL*IITSANFMLLV 256
I LL + L ++ S+ + + SF+M E+ T+L +FD+P + L + S F + +
Sbjct: 445 ISLLCVTVVLFLVTASIRATIIIFFSFLMLALELVTLLCLFDVPLNQLTFVCS--FPVFI 502
Query: 255 KKLAMSIGLSNGYPRGMVEIHELQRQAQRSFIMVMS 148
SI +S + R +F+ ++S
Sbjct: 503 LSFLWSISVSQVFLISRFGPGRTTRTVNSTFVPLLS 538
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +1
Query: 262 QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQED----LQRRHDDEQ 429
QH D ++ +H + QQ+ G HD+ + H H Q+ Q+RHD +Q
Sbjct: 1064 QHPSEQETDHEQPAQHDQQQQNTGQQQQ-HDKQQQHDQQQQHDQQQQHDQQQQQRHDQQQ 1122
Query: 430 --HDELITRH 453
HD+ +H
Sbjct: 1123 QHHDQQQQQH 1132
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +1
Query: 313 EHQQDRGHLGDGHDEGR--SHLPGLGHAGQEDLQRRHDDEQHD 435
+HQQD+ H H R H GH+ E RR D H+
Sbjct: 429 KHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHE 471
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 161 SWSCPMWARAYRCGPATR*RTSASPNLQSYRGAA*VSEGIRCETCTTSXLTI 6
+W W+R CG +T+ T S G A S +R + C T L I
Sbjct: 253 NWYWSGWSRCTGCGYSTQSSTVVIRTAASCGGTACPSVRVRTQRCNTGVLGI 304
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 265 HEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHD 420
+ +R R++ + H+ R L D H+ R+ L A + L+ RH+
Sbjct: 953 NRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNRLRDRHE 1004
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 271 VR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRH 417
+R R+ + H H+ R L D H+ R+ L A ++ L+ RH
Sbjct: 900 LRDRHKASRIRLHDRHEASRNRLHDRHEASRNRLRDRHEASRKRLRDRH 948
>SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018)
Length = 242
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 181 TSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRES 41
TS TV+HH H G+ ++ + L+ +T NR+ +++ +S
Sbjct: 179 TSLTVVHHIHDVMGKFSASPTQKGEVAQLYYRTKNRSSKLNRARPQS 225
>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 326 TVDTSEMVMMKDDLTYLDSDMLVKRTYKDVXXXXXXXXXXHDIVPNLNQKIIE*NIHLLK 505
T DT +V+ D L L L+K+T KDV D+VP L+ K + + L K
Sbjct: 329 TNDTKVIVLANDYLPRLFR--LIKKTNKDVLSDYMMWRLVKDVVPLLSNKFRKAHFDLTK 386
>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
Length = 391
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 349 HDEGRSHLPGLGHAGQEDLQRRH 417
HD G GL + G +DL RRH
Sbjct: 135 HDNGTQCPKGLQYGGHDDLDRRH 157
>SB_10968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 373 PGLGHAGQEDLQRRHDDEQHDELITRH 453
PGL +G+ QR+H+D E+I ++
Sbjct: 92 PGLARSGKSQKQRKHEDIDEMEVIRKY 118
>SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 263 NMKFADVMIYRKDLGMSNTSKTVDTSEMVMMKDDLTYLDSDM 388
NM++ D+ + D+ M + + ++M M +D++ SDM
Sbjct: 238 NMRYNDMSMRHNDMNMRRYNMNMRHNDMNMRRDNMNMRHSDM 279
>SB_21332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 320 SKTVDTSEMVMMKDDLTYLDSDMLVKRTYKD 412
S+ V TS M K L D+D+LV YKD
Sbjct: 32 SQLVGTSHTDMQKFPLRMKDNDLLVTELYKD 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,540,794
Number of Sequences: 59808
Number of extensions: 308696
Number of successful extensions: 917
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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