Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0077
(519 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 33 0.16
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 30 1.1
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 30 1.1
AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical ... 30 1.1
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 28 3.5
U50312-10|AAY86208.1| 356|Caenorhabditis elegans Hypothetical p... 28 3.5
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 28 3.5
Z81034-3|CAB02728.1| 289|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z81034-2|CAB02727.1| 213|Caenorhabditis elegans Hypothetical pr... 27 8.0
U40959-4|AAA81768.1| 112|Caenorhabditis elegans Hypothetical pr... 27 8.0
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 8.0
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 8.0
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 32.7 bits (71), Expect = 0.16
Identities = 32/122 (26%), Positives = 41/122 (33%)
Frame = +1
Query: 52 ETYAAPRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLHHASRISI*Q 231
E + AP + G+ H G H +A AH GH + G + HH S S
Sbjct: 508 EHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHG-------THHGHHGSHHSPAH 560
Query: 232 TD*HGELLH*QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQR 411
HGE H H H + GH GH H GH G+ +
Sbjct: 561 HGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGH---GHHAPAHH----GHHGEHGVHH 613
Query: 412 RH 417
H
Sbjct: 614 GH 615
Score = 31.1 bits (67), Expect = 0.49
Identities = 31/123 (25%), Positives = 38/123 (30%), Gaps = 8/123 (6%)
Frame = +1
Query: 88 GDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLHHASRISI*QTD*HGELLH*QH 267
G+ H G H +A AH GH G + HH+ + H H H
Sbjct: 420 GEHGTHHGHHGEHHHAPAHHGHHESHG---------HGHHSPAHHGHHGEHHHAPAHHGH 470
Query: 268 EVR*RNDLQKRPRHVEHQQDRGHLGD-------GHDEGRSHLPG-LGHAGQEDLQRRHDD 423
+ H EH GH G GH H P GH G+ H
Sbjct: 471 HGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHG 530
Query: 424 EQH 432
E H
Sbjct: 531 EHH 533
Score = 30.3 bits (65), Expect = 0.86
Identities = 29/112 (25%), Positives = 33/112 (29%), Gaps = 2/112 (1%)
Frame = -3
Query: 388 HVRVQVGEIVLHHDHLRGVHGLAGVRHA--EVFSVDHYVSELHVASEEARHVNRSVKWIS 215
H GE HH H G H A H E H+ H E H
Sbjct: 414 HSPAHHGEHGTHHGH-HGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHG 472
Query: 214 ERHGGDT*APATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQH 59
E H HHGH G H+ A H H H + G+H
Sbjct: 473 EHHHAPAHHGHHGEHGTHHGHH--GSHHSPAHHGHHGEHHHAPAHHGHHGEH 522
Score = 29.5 bits (63), Expect = 1.5
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Frame = -3
Query: 355 HHDHLRGVHGLAGVRHAEVFSVDHYVSELHVASEEARHVNRSVKWISERHGGDT*-APAT 179
HH H G HG H S H+ A H + H G+ APA
Sbjct: 480 HHGH-HGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAH 538
Query: 178 STTVLHHG--HVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKS 53
HG H G H+ A H H H + G H S
Sbjct: 539 HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGS 582
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +1
Query: 301 PRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 432
P H EH + + H EG H H + + RH E H
Sbjct: 368 PAHHEHHEHKDGAHHEHKEGEHH-EHAAHHDEHGVHHRHHGEHH 410
Score = 27.5 bits (58), Expect = 6.1
Identities = 31/114 (27%), Positives = 36/114 (31%), Gaps = 1/114 (0%)
Frame = +1
Query: 94 ADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLHHASRISI*QTD*HGELLH*QHEV 273
A H G H +A AH GH + G + HH S S HGE H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGT-------HHGHHGSHHSPAHHGHHGEHHH----- 511
Query: 274 R*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPG-LGHAGQEDLQRRHDDEQH 432
P H H + G GH H P GH G+ H H
Sbjct: 512 --------APAHHGHHGEHG-THHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHH 556
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 289 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 435
+ K + H GH D +D G SH G G + HD +HD
Sbjct: 348 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 394
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 289 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 435
+ K + H GH D +D G SH G G + HD +HD
Sbjct: 366 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 412
>AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical
protein Y32H12A.7 protein.
Length = 600
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 206 WWRYMSSSDKHNGPSSWSCPMWARAYR 126
WWRY+ S +H+GP+ WA R
Sbjct: 120 WWRYLLWSLQHSGPTFIKLGQWASTRR 146
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 292 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 438
Q+ H +HQ QD+ L D + P H G +D Q + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174
>U50312-10|AAY86208.1| 356|Caenorhabditis elegans Hypothetical
protein B0222.11 protein.
Length = 356
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 137 LPTLDMTMMKDRCACRWSSCISTMPLGYPFDRPIDMASFFTSNMKFADVMIYRKDLGMSN 316
L T T +C C + ST P P+D + AS + + F D+ I R++ +
Sbjct: 37 LITQSTTPASPKCQCLPPTTPSTPPNCIPYDSRLQAASLEEAIVAFPDLTITRQEKTQQS 96
Query: 317 TS 322
T+
Sbjct: 97 TA 98
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 292 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 438
Q+ H +HQ QD+ L D + P H G +D Q + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174
>Z81034-3|CAB02728.1| 289|Caenorhabditis elegans Hypothetical
protein C15C6.2b protein.
Length = 289
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 176 HNGPSSWSCPMWARAYRCGPATR*RTSASPNL 81
HN W+C + A +C P+T R S N+
Sbjct: 127 HNDVHKWTCAIMRAAGKCLPSTEPRDDGSLNV 158
>Z81034-2|CAB02727.1| 213|Caenorhabditis elegans Hypothetical
protein C15C6.2a protein.
Length = 213
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 176 HNGPSSWSCPMWARAYRCGPATR*RTSASPNL 81
HN W+C + A +C P+T R S N+
Sbjct: 127 HNDVHKWTCAIMRAAGKCLPSTEPRDDGSLNV 158
>U40959-4|AAA81768.1| 112|Caenorhabditis elegans Hypothetical
protein B0310.4 protein.
Length = 112
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/78 (23%), Positives = 24/78 (30%)
Frame = -3
Query: 346 HLRGVHGLAGVRHAEVFSVDHYVSELHVASEEARHVNRSVKWISERHGGDT*APATSTTV 167
+ RG E + + E H +R E H G+T T
Sbjct: 5 YYRGESHRGETHRGETHRGETHRGETHRGKTHRGETHRGETHRGETHRGETHRGETHRGK 64
Query: 166 LHHGHVQCGQEHTGADRR 113
H G G+ H G RR
Sbjct: 65 THRGETHRGETHRGETRR 82
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 302 LGMSNTSKTVDTSEMVMMKDDLTYLDSDMLVKRTYKDV 415
L +S T ++ S DD TY+ SD+L +R+ V
Sbjct: 261 LNISETRADMEMSRQDAFSDDATYVASDILEERSLSTV 298
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 302 LGMSNTSKTVDTSEMVMMKDDLTYLDSDMLVKRTYKDV 415
L +S T ++ S DD TY+ SD+L +R+ V
Sbjct: 5107 LNISETRADMEMSRQDAFSDDATYVASDILEERSLSTV 5144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,469,075
Number of Sequences: 27780
Number of extensions: 213739
Number of successful extensions: 709
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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