Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0076
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.82 
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   7.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 486 NLFKLSFEFDVRVCFNLILIKMMCSG 563
           NL ++ + + V + FN+ L+ ++CSG
Sbjct: 52  NLRRIYYFYCVSITFNVHLLFLLCSG 77



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 209 SMFFVCFPLFKINIFFCI 262
           S+ F C+ L +I  F+C+
Sbjct: 45  SLVFKCYNLRRIYYFYCV 62


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 168 WIATMLQTVYTQYCLCFLFVSLYLKLTFSSAFNLVTTCKSNLID 299
           ++  M+Q   TQ      FVS + K+ F S    +      ++D
Sbjct: 342 FLIVMIQFEMTQNSTNINFVSTFFKIPFYSTLRPINLLVQIILD 385


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,236
Number of Sequences: 336
Number of extensions: 2584
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)