Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0076
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    31   0.80 
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    31   0.80 
Z67737-4|CAA91539.2|  401|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass...    28   5.6  
Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL033514-28|CAA22089.1|  340|Caenorhabditis elegans Hypothetical...    27   7.4  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 257 CI*SRNDMQK*FNRSRCIKEFNYRHRYIRQV 349
           C   +N++    NR+ CIK F+Y  +Y+RQ+
Sbjct: 727 CTNDKNEILISDNRAHCIKVFSYEGQYLRQI 757


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 257 CI*SRNDMQK*FNRSRCIKEFNYRHRYIRQV 349
           C   +N++    NR+ CIK F+Y  +Y+RQ+
Sbjct: 727 CTNDKNEILISDNRAHCIKVFSYEGQYLRQI 757


>Z67737-4|CAA91539.2|  401|Caenorhabditis elegans Hypothetical
           protein T01H10.5 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 153 WNYTILSAYICLASVLVPTRDHVSARASFVDRQGAPR 43
           WNYTIL  Y+ L  V  P  + VS     V+R   PR
Sbjct: 74  WNYTILLYYLKLVEVQEPA-EKVSVVLELVERWYDPR 109


>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 59 protein.
          Length = 1592

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 547  FISIRLKHTRTSNSKDNLNRFEN 479
            FI ++  H+ TS+ KD+LNR  N
Sbjct: 1568 FIDLQSNHSHTSSDKDSLNRSVN 1590


>Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical
           protein T01H10.6 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 177 SRSRCCQCWNYTILSAYICLASVLVPTRDHVSARASFVDRQGAPR 43
           + +R    WNYTIL  Y+ L  V  P  + VS     V++   PR
Sbjct: 66  NHTRTVDRWNYTILLYYLKLVEVQEP-EEKVSVVLELVEQWYDPR 109


>AL033514-28|CAA22089.1|  340|Caenorhabditis elegans Hypothetical
           protein Y75B8A.29 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 234 YLKLTFSSAFNLVTTCKSNLIDQGVLRNSIIGTDILDKCAFQILNSC 374
           Y+K T   A  LVT+   +++DQ +  N  +  D+ + C F   N C
Sbjct: 282 YVKQTVPKAAPLVTSIPKDMLDQLIKNNKTL--DLEELCRFVADNLC 326


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 189 FVTWSRSRCCQCWNYTILSAY 127
           F TW  S CC+C +  I S Y
Sbjct: 651 FTTWLTSGCCKCSSTAISSLY 671


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,764,214
Number of Sequences: 27780
Number of extensions: 239444
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)