Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0076
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   3.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   8.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   8.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   8.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 297 RLNYFCMSLRD*MQKKMLILNRGKQTKNIDNIVCKQFVTWSRSRCCQ 157
           RL+   MS +  ++K  L LN       I N++C   +    S C Q
Sbjct: 251 RLSSDNMSKKSPVRKATLFLNMASVFMRIFNLICMMLLIGHWSGCLQ 297


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 559 LHIIFISIRLKHTRTSNSKDNLNRFENVSLNILIPNSMKYY 437
           LH+   ++    T   NSK N   +  + +++L      YY
Sbjct: 204 LHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYY 244


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 559 LHIIFISIRLKHTRTSNSKDNLNRFENVSLNILIPNSMKYY 437
           LH+   ++    T   NSK N   +  + +++L      YY
Sbjct: 204 LHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYY 244


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 279 MSLRD*MQKKMLILNRGKQTKNIDNIVCKQ 190
           +++ D M KKM I    K  KN+  +  K+
Sbjct: 17  LAIEDTMSKKMTIEEAKKTIKNLRKVCSKK 46


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 79  GGDVVACWYEHR 114
           G   + CW EHR
Sbjct: 323 GDSALGCWNEHR 334


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 79  GGDVVACWYEHR 114
           G   + CW EHR
Sbjct: 323 GDSALGCWNEHR 334


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 79  GGDVVACWYEHR 114
           G   + CW EHR
Sbjct: 323 GDSALGCWNEHR 334


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 79  GGDVVACWYEHR 114
           G   V CW EH+
Sbjct: 321 GNSAVGCWNEHQ 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,608
Number of Sequences: 438
Number of extensions: 2795
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)