Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0076
(585 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31660.1 68414.m03887 bystin family contains Pfam profile: PF... 32 0.24
At5g25050.1 68418.m02969 integral membrane transporter family pr... 29 1.7
At5g25040.1 68418.m02967 integral membrane transporter family pr... 29 2.3
At1g11230.1 68414.m01286 hypothetical protein contains similarit... 29 2.3
At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr... 29 3.0
At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di... 29 3.0
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 28 5.3
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 27 7.0
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 27 7.0
>At1g31660.1 68414.m03887 bystin family contains Pfam profile:
PF05291 Bystin
Length = 442
Score = 32.3 bits (70), Expect = 0.24
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 219 LFVSLYLKLTFSSAFN---LVTTCKSNLIDQGVLRNSIIGTDILDKCAFQILNSC*VLMN 389
L+ +L L SAFN L CKS + LR ++I IL+KC+ +L+SC L
Sbjct: 258 LYQALKKSLYKPSAFNQGILFPLCKSGTCN---LREAVIIGSILEKCSIPMLHSCVALNR 314
Query: 390 ITA--YKFNRTYLILVL 434
+ Y +Y I VL
Sbjct: 315 LAEMDYCGTTSYFIKVL 331
>At5g25050.1 68418.m02969 integral membrane transporter family
protein similar to biopterin transporter (GI:3377706)
[Leishmania mexicana]; contains 7 transmembrane domains;
contains Pfam PF03092: BT1 family; contains TIGRFAMS
TIGR00788: folate/biopterin transporter
Length = 499
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 138 RLCSSNIGNIWIATMLQTVYTQYCLCFLFV 227
++ + GN+W+A +++ V LCFLF+
Sbjct: 425 KVTRTEFGNLWLAVLVRNVMRLLPLCFLFL 454
>At5g25040.1 68418.m02967 integral membrane transporter family
protein similar to biopterin transporter (GI:3377706)
[Leishmania mexicana]; contains Pfam PF03092: BT1
family; contains TIGRFAMS TIGR00788: folate/biopterin
transporter; Interpro IPR001991/ PR00173
Sodium:dicarboxylater symporter family
Length = 492
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 111 QMLGRYKPTRLCSSNIGNIWIATMLQTVYTQYCLCFLFV 227
+ML K TR + GN+W+A +++ V +CFLF+
Sbjct: 417 KMLHVLKVTR---TEFGNLWLAVLVRNVMRLLPICFLFL 452
>At1g11230.1 68414.m01286 hypothetical protein contains similarity
to cotton fiber expressed protein 1 [Gossypium hirsutum]
gi|3264828|gb|AAC33276
Length = 301
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 141 LCSSNIGNIWIATMLQTVYTQYCLCFLFVSLYLKLTFSSAFN 266
+CS+ I + I+T + T + + FL V+LY L+FS+ ++
Sbjct: 2 VCSTIIKAVLISTGIITAMSMFLKVFLPVTLYFSLSFSTLWS 43
>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -2
Query: 95 ATTSPPEPRSLIGRVRREQ--ERLTLTQ 18
ATTSP +P+SL + RRE+ ERL + Q
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERLKVLQ 231
>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
Dictyostelium discoideum, U66526
Length = 900
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 195 YTQYCLCFLFVSLYLKLTFSSAFNLVTTCKSNLIDQGVLRN-SIIGTDILDKCAFQIL 365
+ Y + F+F LY+ L S AF LV++ S + V+ + G+ +L FQ L
Sbjct: 388 FNDYTIQFMFYFLYINLQISIAF-LVSSAFSKAVTASVVAYIYVFGSGLLGAFLFQFL 444
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 198 CKQFVTWSRSRCCQCWNYTILSAYICLA 115
C++FVT S+ + W+ T+ + ICL+
Sbjct: 211 CRRFVTSSKDGDARIWDITLKKSIICLS 238
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 177 TMLQTVYTQYCLCFLFVSLY 236
TML T+ +QY LC++ VS++
Sbjct: 1829 TMLGTIASQYYLCYMTVSMF 1848
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -2
Query: 92 TTSPPEPRSLIGRVRREQ--ERLTLTQ 18
TTSP +P+SL + RRE+ ERL + Q
Sbjct: 199 TTSPKDPQSLAAKNRRERISERLKILQ 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,659,882
Number of Sequences: 28952
Number of extensions: 204400
Number of successful extensions: 506
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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