Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0069
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396...    29   4.7  
03_06_0464 + 34126930-34127065,34127149-34127333,34127444-341276...    28   8.2  

>07_03_1174 +
           24538522-24538682,24539229-24539430,24539529-24539675,
           24539832-24539944,24540580-24540791,24541194-24541258,
           24541581-24541751,24542543-24542887,24542980-24543173,
           24543292-24543448,24543946-24544010,24544166-24544331
          Length = 665

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 469 VCYCQGGXVRCXRIACFLRNDCAPRLXAXW 558
           +CY QGG      I CF  +D +P   + W
Sbjct: 465 LCYIQGGKAEGMNIPCFGSHDTSPPRGSMW 494


>03_06_0464 +
           34126930-34127065,34127149-34127333,34127444-34127632,
           34128309-34128471,34129046-34129232,34129467-34129611
          Length = 334

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 259 FPGSXPLXRRASAPMEEESNVRSTDANPGLAARLCIDPTI 378
           +P S  L  +A+    EE+ +     NPG    L I PTI
Sbjct: 173 YPASKTLAEKAAWKFAEENGLDVVVVNPGTVMGLVIPPTI 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,200,921
Number of Sequences: 37544
Number of extensions: 268402
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)