Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0069
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1954|AAF53012.2|  777|Drosophila melanogaster CG31869-P...    56   6e-08
EU000366-1|ABS19623.1|  562|Drosophila melanogaster truncated cr...    34   0.21 
AF288223-1|AAG01337.2|  751|Drosophila melanogaster Crossveinles...    34   0.21 
AE013599-3194|AAF46719.2|  751|Drosophila melanogaster CG15671-P...    34   0.21 
AE014134-2167|AAF53171.1| 1354|Drosophila melanogaster CG17211-P...    31   1.5  
AE014134-941|AAF52267.1|  238|Drosophila melanogaster CG14017-PA...    29   6.1  

>AE014134-1954|AAF53012.2|  777|Drosophila melanogaster CG31869-PA
           protein.
          Length = 777

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +1

Query: 409 KNXXVYDNXEKLVIPADTCRVCYCQGGXVRCXRIACFLRNDCAPR 543
           K+   Y N +KLV P   C VCYC+GG + C  + C+ R+DC P+
Sbjct: 176 KDGKTYANGDKLVAPDTPCTVCYCKGGEIVCSPVTCYRRDDCMPK 220



 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 300 DGGGVQCEKHXCESRPGCKAVHRPDHCXPTYQ 395
           DG  V      C+ +  C+A+ R  HC P Y+
Sbjct: 140 DGLWVAESATRCQYQTSCRAIQRTGHCCPDYK 171


>EU000366-1|ABS19623.1|  562|Drosophila melanogaster truncated
           crossveinless 2 protein.
          Length = 562

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 370 PTIAXQXISEXASKNXXVYDNXEKLVIPADTCRVCYCQGGXVRCXRIAC 516
           P  A   +    S +  VY N E   +    CR C C GG +RC ++ C
Sbjct: 308 PRCAVAEVRSECSLDGIVYQNNETWDM--GPCRSCRCNGGTIRCAQMRC 354


>AF288223-1|AAG01337.2|  751|Drosophila melanogaster Crossveinless 2
           protein.
          Length = 751

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 370 PTIAXQXISEXASKNXXVYDNXEKLVIPADTCRVCYCQGGXVRCXRIAC 516
           P  A   +    S +  VY N E   +    CR C C GG +RC ++ C
Sbjct: 308 PRCAVAEVRSECSLDGIVYQNNETWDM--GPCRSCRCNGGTIRCAQMRC 354


>AE013599-3194|AAF46719.2|  751|Drosophila melanogaster CG15671-PA
           protein.
          Length = 751

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 370 PTIAXQXISEXASKNXXVYDNXEKLVIPADTCRVCYCQGGXVRCXRIAC 516
           P  A   +    S +  VY N E   +    CR C C GG +RC ++ C
Sbjct: 308 PRCAVAEVRSECSLDGIVYQNNETWDM--GPCRSCRCNGGTIRCAQMRC 354


>AE014134-2167|AAF53171.1| 1354|Drosophila melanogaster CG17211-PA
           protein.
          Length = 1354

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 409 KNXXVYDNXEKLVIPADTCRVCYCQGGXVRCXRIACFLR-NDCAP 540
           KN  VY +   +   ++ C  CYC GG  +C +  C L    C P
Sbjct: 145 KNGTVYKSGSAMS-SSNLCSYCYCIGGTEKCVKPKCMLPVEGCKP 188


>AE014134-941|AAF52267.1|  238|Drosophila melanogaster CG14017-PA,
           isoform A protein.
          Length = 238

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
 Frame = +3

Query: 201 DLKXVDCXLGDVXYLPGDEIPRFXPSAXKSKC----SDGGGVQCEKHXCESRPGCKAVHR 368
           DL  ++   G V     D   +  P A K  C     DG  +  EK+  E  P CK +  
Sbjct: 163 DLSFINWSNGRVHSNDSDNY-KVIPDAVKGLCFAHKGDGSMLSIEKYITEEHPLCKFIES 221

Query: 369 PDH 377
           P H
Sbjct: 222 PKH 224


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,237,279
Number of Sequences: 53049
Number of extensions: 417135
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)