Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0069
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 325  FSHWTPPPSEHLLFXAEGXNLGISSPGRY 239
            F+ W PPP     F A   N+    P +Y
Sbjct: 1161 FNFWNPPPFMPSPFMAGAPNVPTILPEQY 1189


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 472 CYCQGGXVRCXRIACFLRNDCAP 540
           C C+ G +R  +  C  R+ C P
Sbjct: 71  CVCRLGYLRNKKKVCVPRSKCLP 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 373  SGRCTALQ-PGLDSHXCFSHWTPPPSE 296
            SG  T+++   LD H     W PPP E
Sbjct: 977  SGPPTSIRVDDLDQHTLKVTWKPPPRE 1003


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 140 LPCXRGGPVGPLPNVTSV 193
           LP   G P+ P+PN++++
Sbjct: 409 LPPSAGAPMPPIPNMSNM 426


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 304 EEESNVRSTDANPGLAARLCIDPT 375
           +EE+ + S   +PGL A + I  T
Sbjct: 118 DEENGLTSESTDPGLVAGIVIGVT 141


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 304 EEESNVRSTDANPGLAARLCIDPT 375
           +EE+ + S   +PGL A + I  T
Sbjct: 89  DEENGLTSESTDPGLVAGIVIGVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,686
Number of Sequences: 438
Number of extensions: 2722
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)