Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0068
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.081
SB_48395| Best HMM Match : MAM (HMM E-Value=0) 34 0.14
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8) 30 1.7
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 30 2.3
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0) 29 3.0
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05) 29 5.3
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022) 28 7.0
SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 9.3
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21) 28 9.3
SB_14537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11) 28 9.3
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 9.3
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 28 9.3
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 36.3 bits (80), Expect = 0.027
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +3
Query: 198 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 335
P P + PP P P YP PP N+ YP Y PP N
Sbjct: 139 PYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPN 184
Score = 34.7 bits (76), Expect = 0.081
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 234 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 335
PP P P P Y PP N YP Y PP N
Sbjct: 133 PPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPN 166
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +3
Query: 195 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYY---PQNTYAPPQN 335
PP P + PP P P YP Y PP N Y P Y PP N
Sbjct: 151 PPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPN 200
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 195 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQN---TYAPPQN 335
PP + P PP P P P Y PP N+ YP + Y PP N
Sbjct: 104 PPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPN 153
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Frame = +3
Query: 195 PPIQWKPQNTWNAPP-KPIQPINTYP---QNNYAPPQNSYY---PQNTYAPPQN 335
PP + P + PP P P YP Y PP N+ Y P Y PP N
Sbjct: 84 PPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPN 137
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 234 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 335
PP P P P Y PP N+ P Y PP N
Sbjct: 196 PPPPNAPNPPPPNPPYPPPPNA--PNPPYPPPPN 227
>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 34.7 bits (76), Expect = 0.081
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 344
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 429 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 469
Score = 34.7 bits (76), Expect = 0.081
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 344
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 436 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 476
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 207 WKPQNTWNAPPKPIQP-INTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 344
+ P++ + P K QP +Y P +Y PP SY P +Y PP +Y+
Sbjct: 406 YDPESQFRPPFKSYQPPYKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQ 455
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 344
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 422 PYKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 462
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 344
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 443 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPYKSYQ 483
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 344
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 457 PHKSYQPPHKSYQP----PHKSYQPPYKSYQPPYKSYQPPYKSYQ 497
>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
Length = 901
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 717 CSFRLQPARLXLWHFDQG-LPE*QQVRXEEWVNGPXKHGSQSCRPSSGRCKLCHQLQCKS 541
C F L LW D+ P V W + GS + P SGR + + ++
Sbjct: 301 CDFGTSAPTLCLWRNDKNNTPTNDGVYNFNWFSHNGPTGSANTGPPSGRGGSGYYIYLET 360
Query: 540 TSPFSPGL 517
+SPF PG+
Sbjct: 361 SSPFQPGM 368
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 31.1 bits (67), Expect = 1.00
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 231 APPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNT 338
+PP P P ++ APP+ S P + APPQ T
Sbjct: 738 SPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQTT 773
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 396 PVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVY- 572
P + E+YY D E A G G++G P E + +Y+Y GAD + Y
Sbjct: 1078 PYQEGEVYYYDEQGNIVEGYDA-GQVYGQDGQLLAPAVEATEAYGEEYYTYEGADQQAYP 1136
Query: 573 TVHYWADKTGYHAYXD 620
+ + + G Y D
Sbjct: 1137 SEQVYVEGQGEAQYAD 1152
>SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)
Length = 366
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 210 KPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNT 338
+P N N P IQP +TY Q + QN P +TY P +T
Sbjct: 17 QPNNPCN-PTTYIQPKDTYNQTTHTTQQNK-QPNDTYNPTTHT 57
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 213 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 344
P + +NA +P+Q + P PQ APP N+Y+
Sbjct: 645 PGSQYNASSEPVQMFDYLPPGQSGRSMRPSMPQYPQAPPYNSYQ 688
>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 216 QNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 344
+NT PP P Q T N +PPQ N PP NT R
Sbjct: 475 ENTRRNPPPPSQDPTT---GNPSPPQEQPTTGNPTPPPNNTLR 514
>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
Length = 554
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = +3
Query: 213 PQNTWNAPPKPIQP--INTYPQNNYAPPQNSYYP--QNTYAPPQNTY 341
PQ + PP +Q PQ Y PPQ Y P Q Y P Q Y
Sbjct: 237 PQGYGHPPPVDVQSGYAGQPPQQGYPPPQGGYPPPQQPGYNPQQPGY 283
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 195 PPIQWKPQNTWNAPP--KPIQPINTYPQNNYAPPQNSYYPQNT 317
PP Q P APP +P+QP + Y PPQ YP ++
Sbjct: 451 PPSQSTPSQ--QAPPTKQPMQPQHQYQARPGGPPQQRQYPPSS 491
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 465 HRRFDTRICNCHYHHNTFHS 406
HR F CNCHY +N +S
Sbjct: 753 HRHFSLSRCNCHYENNNNNS 772
>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 225 WNAPPKPIQPINTYPQNNYAPP 290
++ PP+ + TYP NNY PP
Sbjct: 14 YSQPPQGYPGVQTYPINNYPPP 35
>SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05)
Length = 322
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 305 SSEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQ 406
S EY SKHLS L H +IS+ + S +D+
Sbjct: 71 SKEYKEKMSKHLSDFLPHLYISNMYSSKSTANDE 104
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +3
Query: 207 WKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYP---QNTYAP-PQNTY 341
+ P + + PP P Q Q +Y P YP Q +Y P PQ +Y
Sbjct: 302 YPPTSQQSYPPTPQQSYPLTSQQSYLPTSQQSYPPTSQQSYPPSPQQSY 350
>SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022)
Length = 236
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = +3
Query: 219 NTWNAPPKPIQPINT---YPQNNYAPPQNSYYPQNTYAPPQNTY 341
N P+ QP+ YP PPQ Y PQ Y Q T+
Sbjct: 11 NRMQEGPEMAQPVTGQPGYPPQQGYPPQQGYPPQQGYPHAQTTH 54
>SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 435 SYKYEYQIADGTHVGEEGYFTNPNTE 512
S ++E +I DG G++G F + NTE
Sbjct: 43 STQWEVKIQDGARTGQKGIFRDDNTE 68
>SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 231 APPKPIQPINTYPQNNYAPPQNSYY 305
APP P PI T PP N YY
Sbjct: 41 APPMPTVPIQTPSAPYQPPPSNDYY 65
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = +3
Query: 201 IQWKPQNTWNAPPKPIQPINTYPQ---NNYA--PPQNSYYPQNTYAPP 329
+Q +P PP P N YP NYA PP Y PQ APP
Sbjct: 356 LQGQPPPGTYYPPPPQGNYNQYPVPGGQNYAGAPPPPYYPPQEYQAPP 403
>SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 188 PEPAYPVETSKYVERSTQADPADKH--LSPKQLRPPSK 295
P+P P+ SK R T+ A KH LS + R P K
Sbjct: 307 PQPTKPLPASKEASRKTKKSAASKHRILSVRLHRKPKK 344
>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 564
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 195 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNT 338
P + P AP P Q + TYP+ + + P P T PP T
Sbjct: 19 PAVPNSPPGGNGAPVLPHQEVATYPEASNSCPSIHVLPDVTARPPSCT 66
>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
Length = 564
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 539 PALFHQACLFCIGIREVAFLAYVCSIGDLILVFVTAIITIIHFIL 405
PA L C+ I + + + I +I++F+T I+ II I+
Sbjct: 316 PATSDAQLLLCLHIYIITIIITIIIIITIIIIFITTILIIITIII 360
>SB_14537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 195 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAP 326
P +++P NT P QP Y N P Y+P Y P
Sbjct: 31 PSTRYQP-NTRYQPNTRYQPNTQYQPNTRYQPNTRYHPNTRYQP 73
>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
Length = 900
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 618 PXKHGSQSCRPSSGRCKLCHQLQCKSTS 535
P + G+ S G C++C+ +QC S S
Sbjct: 396 PARGGADCVGSSRGHCRVCNSVQCPSGS 423
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 444 YEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGA 557
Y + +A G+ +G T P+T+ + GWY+YT A
Sbjct: 3913 YAWVVAQGS-TSTQG--TGPSTDHTTGTANGWYAYTDA 3947
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +3
Query: 195 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 332
PP Q P P P + AP Q Y+PQ PPQ
Sbjct: 798 PPTQGGPPQAQPPPHAPPGQAHYQQLGAAAPNQGGYHPQQPPPPPQ 843
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,732,652
Number of Sequences: 59808
Number of extensions: 475191
Number of successful extensions: 1785
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1759
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -