Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0067
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 28 1.0
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 28 1.0
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 28 1.0
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 28 1.3
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 27 3.1
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 27 3.1
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 5.4
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 5.4
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces... 25 7.2
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 9.5
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 332 INEAEHLFLCHIDTILRLPH*DHLVSVCTQ*VHRLPVGSVPLRVL 198
++E +L H LR+P D V VC + + G +PL VL
Sbjct: 116 LDEQHERYLIHDQNSLRVPRKDTRVHVCLYFITPVSFGMLPLDVL 160
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -3
Query: 309 SMSHRYNPE---ASSLRPPSFSLHAVGPQATSWIRPTPSIGNDRVLGAAPGLYLKNSVE 142
S SH N E +SS+ PP S P ++S R +P +D + +PG L+ SV+
Sbjct: 80 SPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLHRSSPKRPHDSLGEESPGKLLRTSVK 138
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 442 SCRSRLRNTLVHKRT*NGRHKGQ 510
SC++ LRN LVH + G+ KG+
Sbjct: 309 SCKNYLRNLLVHSKNDLGKQKGE 331
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 279 SSLRPPSFSLHAVGPQATSWIRPTPSIGNDRVLGAAPGLYLKNSVEPLNQL 127
+SL P SFSL + ++W+ P D + +AP L+ ++ N L
Sbjct: 79 TSLSPHSFSLSDMESSMSNWLNP---FAFDNTMNSAPPLFTSTNMGSPNSL 126
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 603 SLPYLNSAHCIVIVGGTPTKSNLELFFFKVAL-PLVSSI 490
SL YL + C++I+G +PTK LE + A PL+ ++
Sbjct: 265 SLIYLTT--CLLILGKSPTKGLLEKYKLTAAFEPLIKAL 301
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 494 PFHVRLCTNVFRSRERHDN 438
P H C N FR++ER N
Sbjct: 347 PLHAETCINAFRTQERKQN 365
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 261 SFSLHAVGPQATSWIRPTPSIGNDRVL 181
S ++ + GP A++ PS+ N+RVL
Sbjct: 675 SLNMDSTGPSASNMANAPPSVRNNRVL 701
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 549 TKSNLELFFFKVALPLVSSISCPFMY 472
T S LE FF+ + P +S S PF Y
Sbjct: 431 TLSPLETFFWCCSFPSTASTSSPFSY 456
>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 320 PPHLFESRKAYMQVHGHEH 376
PPH FE+ VHGH H
Sbjct: 170 PPHYFENYVWPGYVHGHSH 188
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 547 EIESRTVFFQGRFAPCVFHFMSVYVPTYFGVGSGTTIGLYQF 422
E++ R + + V F S+ +P FG G+G + GLY+F
Sbjct: 111 EVDLRVLVLNYKVTLLVTVF-SIVIP--FGAGAGISAGLYKF 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,747
Number of Sequences: 5004
Number of extensions: 57566
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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