Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0067
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0622 + 5124213-5125292,5126820-5128685 32 0.46
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984... 31 0.60
01_06_1010 + 33802947-33803473,33804096-33804273 29 3.2
04_03_0716 + 18995712-18995904,18996511-18996614,18997280-189973... 29 4.2
03_05_0774 - 27615899-27617134 29 4.2
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 29 4.2
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 29 4.2
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529... 28 5.6
07_03_1247 - 25161068-25161197,25161351-25161418,25161515-251616... 28 7.4
05_05_0066 - 22094713-22094819,22094904-22095011,22095113-220954... 27 9.8
05_03_0170 - 9132207-9133010,9133232-9133894 27 9.8
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 27 9.8
>12_01_0622 + 5124213-5125292,5126820-5128685
Length = 981
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -3
Query: 237 PQATSWIRPTPSIGNDRVLGAAPGLYLKNSVEPLNQLRI 121
P +SW+RP P R+ A LK SVE LNQLR+
Sbjct: 107 PTGSSWLRPGPLAARGRI--ADRIRELKASVEELNQLRL 143
>07_03_0739 -
21096684-21096742,21096822-21097076,21097206-21098498,
21098616-21098688
Length = 559
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 354 IYALRDSNK*GGASLSMSHR-YNPEASSLRPPSFSLHAVGPQATSWIRPTPSIGNDRVLG 178
I+AL + NK GG S+ + + P+ + + F P SW +IGN R+ G
Sbjct: 333 IFALFNENKKGGPSIESNFGLFYPDGTKVYDVDFHGGGTCPTKESWCVANAAIGNARLQG 392
Query: 177 A 175
A
Sbjct: 393 A 393
>01_06_1010 + 33802947-33803473,33804096-33804273
Length = 234
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -3
Query: 345 LRDSNK*GGASLSMSHRYNPEASSLRP----PSFSLHAVGPQATSWIRPTPSIGNDRVLG 178
LR+++ AS S SH +AS +RP P P + S TP + + +L
Sbjct: 121 LREASASASASFSFSHWSRSQASRVRPHGAAPGPFSFPSSPASASSGTSTPKLAHGGILT 180
Query: 177 AAPGLYLKNSVEPLNQLR 124
GL +S E L+ L+
Sbjct: 181 ELLGLLYSSSHEGLHYLQ 198
>04_03_0716 +
18995712-18995904,18996511-18996614,18997280-18997393,
18997819-18997824,18998041-18998097
Length = 157
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 13 CRKLATFQHHVPHGPRGSVAGTGR--SGHRVPLRRQLH 120
CR LA VP PR + A R +G R P RR H
Sbjct: 4 CRALALRSLLVPDHPRAAAAAAARPAAGRRAPRRRSRH 41
>03_05_0774 - 27615899-27617134
Length = 411
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 333 NK*GGASLSMSHRYNPEASSLRPPSFSLHAVGPQATSWIRPT--PSIGNDR 187
N+ G +L + PE + +PP + P A+ + PT PSIG R
Sbjct: 332 NRRSGGALGTNGETKPEPVAEKPPVVEAKSTAPAASVVVGPTRPPSIGGPR 382
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 324 GGASLSM--SHRYNPEASSLRPPSFSLHAVGPQATSWIRPTPSIGNDRVLGAAP 169
GGA+ +M A L PP+ S A+ P +TS + P PS + L P
Sbjct: 202 GGAAAAMPGGDMEQMGAGLLSPPAMSSAALSPMSTSSLSPLPSPMSSTALSPLP 255
>01_06_0276 -
28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = -2
Query: 598 SVSELSTLHRHSRRDTY--EIESRTVFFQGRFAPCVFHFMSVYVPTYFGVGSGTTIGLYQ 425
S+ L R +RD Y + SRT+ ++G+ PC Y Y +G
Sbjct: 246 SIRAALNLRRGGKRDFYMCSLSSRTIVYKGQLKPC--QLKGYY---YADLGHENFTSYMA 300
Query: 424 FPFSVFLSQTFEQW 383
S F + TF W
Sbjct: 301 LVHSRFSTNTFPSW 314
>03_03_0158 -
14951504-14951568,14952722-14952797,14952876-14952943,
14952997-14953156,14953239-14953425,14953982-14953986
Length = 186
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 244 SRSTGYQLDPSHSEYWKRSCTRRGARFVPEELS-GAFEPVEDREVGVVAALDVHFVLSRP 68
+RS Y + + S++W R + G V ++ ++ +D ++G+ L VHF+L
Sbjct: 72 ARSICYLIKKAESKWWPRLLKKEGKPPVFLKVDWDKWQDEDDEDIGLWRELTVHFLLVAV 131
Query: 67 HYLGD 53
GD
Sbjct: 132 GDFGD 136
>07_03_1247 -
25161068-25161197,25161351-25161418,25161515-25161610,
25161866-25161940,25162364-25163008
Length = 337
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 324 GGASLSMSHRYNPEASSLRPPSFSLHAVGPQAT-SWIR 214
GGA+ R+ P AS P LH GP AT W R
Sbjct: 32 GGATTVQCWRFPPGASEELPVLVLLHGFGPPATWQWRR 69
>05_05_0066 -
22094713-22094819,22094904-22095011,22095113-22095437,
22095520-22095885,22095959-22096159
Length = 368
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 260 LGGLSEEASGLYRCDIERDAPP 325
L GLS +GL D ERDAPP
Sbjct: 45 LAGLSRRLAGLLGDDGERDAPP 66
>05_03_0170 - 9132207-9133010,9133232-9133894
Length = 488
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 119 TILNWFKGSTEFFRYKPGAAPSTRSFPI-LGVGRIQLVACGPTACRLKLGGLSEEASGLY 295
T+ +W + E R + GAAPS + LGV LV A + + G G
Sbjct: 41 TVKSWVRARMEHGRRRDGAAPSRAEVQLMLGVVGAPLVPQAVEARKAMVAGRGVGGEGEE 100
Query: 296 RCDIERDAPPHLFE 337
D+E ++ E
Sbjct: 101 PLDLEASKARYIVE 114
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 625 TXFFGAQ*PSVSELSTLHRHSRRDTYEIESRTV 527
T FFGA S+ E +H+H D Y+ R++
Sbjct: 70 TVFFGANDASLPERKQVHQHVPLDEYQSNLRSI 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,828,567
Number of Sequences: 37544
Number of extensions: 412312
Number of successful extensions: 1146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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