Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0067
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18790.1 68417.m02775 NRAMP metal ion transporter 5, putative...    30   1.2  
At4g28080.1 68417.m04027 expressed protein                             30   1.5  
At3g04930.1 68416.m00535 expressed protein  contains Pfam profil...    29   2.0  
At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase NAD-bi...    29   3.5  
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:...    28   6.2  
At1g75100.1 68414.m08722 expressed protein low similarity to SP|...    28   6.2  
At4g22400.1 68417.m03237 expressed protein                             27   8.2  
At3g15260.2 68416.m01928 protein phosphatase 2C, putative / PP2C...    27   8.2  
At3g15260.1 68416.m01927 protein phosphatase 2C, putative / PP2C...    27   8.2  

>At4g18790.1 68417.m02775 NRAMP metal ion transporter 5, putative
           (NRAMP5) identical to heavy metal transporter
           [Arabidopsis thaliana]gi|12657269|emb|CAC27822; similar
           to metal transporter Nramp3 [Arabidopsis thaliana]
           gi|6468012|gb|AAF13278; member of the natural
           resistance-associated macrophage protein (NRAMP) metal
           transporter family, PMID:11500563
          Length = 530

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -2

Query: 556 DTYEIESRTVFFQGRFAPCVFHFMSVYVPTYFGVGSGTTI-GLY--QFPFSVFLSQTFEQ 386
           D+  + +   + Q ++   VF  + ++       G  +TI G Y  QF    FL    EQ
Sbjct: 326 DSIGLVNAGYYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMEGFLDLQMEQ 385

Query: 385 WLPVFVT 365
           WL  F+T
Sbjct: 386 WLSAFIT 392


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 43   VPHGPRGSVAGTGRSGHRVP 102
            VP+GPR S  G  RSG+RVP
Sbjct: 1467 VPYGPRLSGGGYNRSGNRVP 1486


>At3g04930.1 68416.m00535 expressed protein  contains Pfam profile:
           PF04504 protein of unknown function, DUF573
          Length = 456

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 624 LNSLEPSSLPYLNSAHCIVIVGGTPTKSNLELFFFKVALPLVSSI 490
           LNS   SSLP +++     +V GTPT ++       VALP  S++
Sbjct: 62  LNSPSTSSLPMVSTISATAVVSGTPTATS-STGAVTVALPAGSAV 105


>At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein low similarity to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase;
           supporting cDNA gi|15375067|gb|AY044183.1|
          Length = 289

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 184 TRRGARFVPEELSGAFEPVEDREVGVVAALD 92
           T +G RFV   +SG+ +P ED ++ ++AA D
Sbjct: 109 TGKGGRFVEGPVSGSKKPAEDGQLIILAAGD 139


>At2g20290.1 68415.m02370 myosin, putative similar to myosin
           (GI:499047) [Arabidopsis thaliana]
          Length = 1493

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 633 KRALNSLEPSSLPYLNSAHCIVIVGGTPTK 544
           KR L   +P+   YLN +HCI + G   +K
Sbjct: 278 KRKLKLNDPTEFRYLNQSHCIKLDGVDDSK 307


>At1g75100.1 68414.m08722 expressed protein low similarity to
           SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
           sapiens}
          Length = 651

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 153 SSGTNRAPRRVHDRFQYSEWDGSNW*PVDLL 245
           SSG +   R +    QY  W GS W PV L+
Sbjct: 564 SSGKSGNIRSLLSTLQYILWSGSGWKPVPLM 594


>At4g22400.1 68417.m03237 expressed protein
          Length = 327

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 174 PRRVHDRFQYSEWDGSNW*PVDLLRAD 254
           P+R    FQ  EW+ SN+ PVD ++ D
Sbjct: 235 PKRYDFTFQTQEWNVSNFIPVDPIQWD 261


>At3g15260.2 68416.m01928 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GB:AAD17805 from [Lotus japonicus]
          Length = 289

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 139 FEPVEDREVGVVAALDVHFVLSRPHYLGDH 50
           F+ V+D E+G+ A  D H     P YL  H
Sbjct: 63  FKEVDDNELGLFAIFDGHLSHEIPDYLCSH 92


>At3g15260.1 68416.m01927 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GB:AAD17805 from [Lotus japonicus]
          Length = 289

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 139 FEPVEDREVGVVAALDVHFVLSRPHYLGDH 50
           F+ V+D E+G+ A  D H     P YL  H
Sbjct: 63  FKEVDDNELGLFAIFDGHLSHEIPDYLCSH 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,638,904
Number of Sequences: 28952
Number of extensions: 314744
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)