Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0066
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    28   1.1  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    28   1.1  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   2.0  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    27   3.4  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   4.5  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    26   4.5  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.9  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   7.9  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 152 IALRERKRDKPILELSKHSKKFDISS-LQDNYLKYDPSVPQNLQIVEMDSNILDLKESFR 328
           I  R +KRD+ IL    ++ KF+ SS  ++N +  D   P+ +Q   ++ N LD + +  
Sbjct: 240 IMKRGKKRDRSILWEELNNGKFEFSSRSEENSVLLDDFTPETVQ--PLEENELDTELNIE 297

Query: 329 YEGE 340
            E +
Sbjct: 298 NEAK 301


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 455 TLEDAVSVDVSVNYSTPTGRTRPLEY--RWSIERGPCSASCGGGVRLI 592
           TL+  V ++ + N+    G   PL+   + S + G C+A+  GG+RL+
Sbjct: 164 TLDSGVILENADNFLAEKGYMFPLDLGAKGSCQVGGCAATAAGGLRLL 211


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 299 YCPFPQSEDSEARSDRISSSCPEGS*CRIFWS 204
           Y  F   ED E   D ++ +  +G  CRI WS
Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 158 LRERKRDKPILELSKHSKKFDISSLQDNYLKYDPSVPQNLQIVEMDSNILDLKESFRYEG 337
           L E     P ++ S  S K  +S  +++ L        NL + E+ + + ++KE  R  G
Sbjct: 87  LTETTTPSPAVKASPASTKLSVS--ENDRLSIPEITKDNLTLTEIIAKLREMKEPIRLFG 144

Query: 338 EAITAGTLLRW 370
           E+  A T+ R+
Sbjct: 145 ESEEA-TIQRY 154


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +2

Query: 137 PIPLHIALRERKRDKP-ILELSKHSKKFDISSLQDNYLKYDPSVPQNLQIVEMDSNILDL 313
           P+P HI         P + + S    K ++++++ +  +   S+  N  I  M +N+LD 
Sbjct: 628 PLPYHIVYMFSFETSPTVFQTSPEEDKENVNNIKISQPRN--SLQTNGYIEGMANNVLDA 685

Query: 314 KESFRYEGEAITAGTLLRWNQTDTDIYITSESR 412
             +   E  AI+   L  + +  ++IY   + R
Sbjct: 686 SFNVEDESHAISDSELGYFCEDQSNIYEVEDMR 718


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 320 SLSSLKCYCPFPQSEDSEARSDRISSS 240
           S +S  CY  +P S D E R++  SSS
Sbjct: 132 SPNSENCYLAYPDSRDHEPRTEGESSS 158


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 170 KRDKPILELS-KHSKKFDISSLQDNYLKYDPSVPQNLQIVEMDSN 301
           K  K  LE   K+S +  ++   +NY  Y  S+P N Q+ + DSN
Sbjct: 106 KSSKDTLEKQPKYSSQIYLTDSFENY--YLASLPTNYQLYQRDSN 148


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +2

Query: 194 LSKHSKKFDISSLQDNYLKYDP----SVPQNLQIVEMDSNIL 307
           L K   +F + +L  NY  Y P    +VP+N Q++  + +++
Sbjct: 176 LFKRDGQFVLQALDHNYAVYGPETVLNVPENAQLLVTEKDVI 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,567
Number of Sequences: 5004
Number of extensions: 56493
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)