Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0066
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    32   0.38 
04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713     29   2.7  
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235...    29   4.7  
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312...    28   6.2  
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695...    28   8.2  
04_01_0044 + 489486-490012,490903-491332                               28   8.2  
01_06_1346 - 36478844-36479266,36479369-36479728,36479820-364801...    28   8.2  

>03_05_0226 -
           22115285-22115404,22115477-22116661,22117037-22117861,
           22118029-22118106,22118370-22118420,22118510-22118581,
           22118666-22118667,22119453-22119557,22119668-22119749,
           22120178-22120227,22120514-22120567,22121084-22121164,
           22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 206 SKKFDISSLQDNYLKYDPSVPQNLQIVEMDSNILDLKESFRYEGEAITAGTLLRWN 373
           ++ F  +SL +  +   PS+ +  Q +  +SN +    +F+ E E +    L  WN
Sbjct: 263 AQNFSYTSLMEQIISSQPSISEVQQEISTESNFVATPRAFQVEDEDLEDNELENWN 318


>04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713
          Length = 236

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 125 HIATPIPLHIALRERKRDKPILELSKHSKKFDISSLQDNYLKYDPS 262
           H+   I L  AL   +R  P+L + + S+ +D      +  KYDP+
Sbjct: 130 HVKDIIHLRSALHRLRRQGPLLAVIRISRNYDECRKSGHVYKYDPA 175


>01_07_0126 -
           41222916-41222942,41223120-41223190,41223478-41223560,
           41223587-41223653,41223740-41223848,41224431-41224511,
           41224671-41224940,41225035-41226510,41226832-41226908,
           41227812-41227912,41229397-41229660,41230964-41231136
          Length = 932

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 587 IAHRHRRTRNTDRALSTTCIPMVSCVQLECC 495
           +A +  RTRN   A++T  IP+V+   LECC
Sbjct: 717 VAEKFARTRNMLEAIATG-IPVVTPAWLECC 746


>05_05_0315 -
           24030695-24030787,24030896-24030995,24031120-24031247,
           24031350-24031517,24031626-24031741,24031773-24031896,
           24032085-24032254,24032255-24032999
          Length = 547

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 594 QPSVIEIRNVHRLDTNHAIHTVVNLCGASD 683
           QP V+E++  +  +  HA+H V+ LC   +
Sbjct: 126 QPGVVELKGAY--EDKHAVHLVMELCAGGE 153


>06_02_0333 +
           14567509-14568081,14568109-14568438,14568642-14569550,
           14569598-14569777,14570416-14570698,14571339-14571832
          Length = 922

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 245 LKYDPSVPQNLQIVEMDSNILDLKESFRYEGEAIT-AGTLLRWNQTDTDIYIT 400
           +KY P+ PQN+Q+VE++    D  E    E   IT  G  +R   ++  ++ T
Sbjct: 582 IKYGPN-PQNIQVVEVEPPKTDSLEPLFEEASKITCTGQEVRVASSEEAVFCT 633


>04_01_0044 + 489486-490012,490903-491332
          Length = 318

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 563 ASCGGGVRLITAQCHRDQKCPPPRYESCNTHSCEF 667
           A  G G+ L+  +C+R +  PPP   +    SC F
Sbjct: 10  AGAGAGLPLVLRRCNRSRTPPPPMVMTPLHRSCFF 44


>01_06_1346 -
           36478844-36479266,36479369-36479728,36479820-36480110,
           36480193-36480267,36482292-36482446,36482549-36482665,
           36482757-36482976
          Length = 546

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 536 WSIERGPCSASCGGGVRLITAQCHRDQK--CPPPR 634
           W +E+G C+  C G      A   RD+K   P PR
Sbjct: 201 WYVEQGICAPDCDGSASFRAAFHRRDEKWWLPVPR 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,302,205
Number of Sequences: 37544
Number of extensions: 412265
Number of successful extensions: 1154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)