Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0066
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   3.0  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   3.0  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   3.0  
AY341206-1|AAR13770.1|  196|Anopheles gambiae SP14D1 protein.          24   4.0  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    23   7.0  

>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 296 SNILDLKESFRYEGEAITAGTLLRWNQT 379
           +N+LD+ + FR+    +T G  L  N T
Sbjct: 402 ANVLDIDDDFRHNCRPLTPGGTLPHNPT 429


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 269 QNLQIVEMDSNILDLKESFRYEGEAITAGTLLRWNQ 376
           + L+I+++D N+L     F +EG        L++N+
Sbjct: 840 KELEILQLDHNLLTALNGFEFEGLDSLKELFLQYNR 875


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 488 VNYSTPTGRTRPLEYRWSIERGPCSASC 571
           V+ STP  +T+P  Y W+ ER      C
Sbjct: 295 VSSSTPYYQTKPQVYWWTPERAQLRELC 322


>AY341206-1|AAR13770.1|  196|Anopheles gambiae SP14D1 protein.
          Length = 196

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
 Frame = +2

Query: 305 LDLKESFRYEGEAITAGTLLRWNQTDTDIYITSESRLQTDLMIMAIP-VNPTLE-DAVSV 478
           L L  S R    A  +     W +T+T     S+ +L+ +L ++ +   +P  + + +S+
Sbjct: 70  LPLSNSLRNRKHAGLSSYAAGWGKTETAS--ASQKKLKVELTVVDVKDCSPAYQRNGISL 127

Query: 479 DVSVNYSTPTGRTRPLEYRWSIERGPCSASCGGGVRLITAQCHRDQKCPPPRYESCNTHS 658
           D +       G  R  +       GP      G   LI       QKC  P      T+ 
Sbjct: 128 DST---QMCAGGIRGKDTCSGDSGGPLMRQMSGSWYLIGVVSFGPQKCGAPGVPGVYTNV 184

Query: 659 CEFV 670
            E+V
Sbjct: 185 AEYV 188


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 326 ESSLSSLKCYCPFPQSEDSEARSDRISSSCPE 231
           E  L S KC CP   +   + + D +    PE
Sbjct: 426 ERLLDSSKCTCPIALARRLDPKGDYVKRYLPE 457


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,739
Number of Sequences: 2352
Number of extensions: 16196
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)