Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0064
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    28   1.1  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    28   1.5  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    27   3.4  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   4.5  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   6.0  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    26   6.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   7.9  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       25   7.9  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   7.9  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   7.9  

>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 345 FVNYPDVCLFVANSNVRVIFDDH--AKVPY-LYKQKEWTSFDSAHSVMEKAKYI 497
           F +Y  VC F+ N+N+  +   H    V Y +Y++ + T F S  ++     Y+
Sbjct: 288 FYSYQAVCTFLENNNLLSVIRAHEAQDVGYRMYRKTKTTGFPSLMTIFSAPNYL 341


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 141 LFSRPSESLYMGTLNVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASG 320
           LF +P  S+     N +    + LNK LD +  + GI  +G  F    +DN + G P  G
Sbjct: 531 LFLKPKMSVLP---NADGEGQLQLNKALDDENDLDGIQPHG--FDSDGSDNVDEGIPPYG 585

Query: 321 YGSLGS 338
           +G   S
Sbjct: 586 FGDSDS 591


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 438 VYISKALLRDHQISL*HYCWLQISKH 361
           VYI + LL     SL HY W  I KH
Sbjct: 38  VYIKEKLLTTSSNSLTHYQWYLIYKH 63


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 111 YTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTL 278
           YTP    N+PL    +E +  G +N++   N   ++ +   K ++ +   GHS TL
Sbjct: 44  YTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVEKTGHSGTL 99


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 111 YTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMYLNKGL 224
           YT     +    S P+ SL +  +NVN    +YL+ GL
Sbjct: 650 YTTLENLSVQALSSPANSLCIIPMNVNGVSTLYLHIGL 687


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 411 DHQISL*HYCWLQISKHLGN*QSLVNLEIRSLKLDCQYLGCLHSL 277
           ++QIS  H+ W + SKHL N   L+   +    L  Q+L  + S+
Sbjct: 17  ENQISEDHFRWKKNSKHLYN--LLITRTLTWPSLSIQWLSAMESI 59


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 222  LDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSL 332
            L+ + ++VGIP  G  F +VN+D  N  +P    G L
Sbjct: 2043 LESNIMMVGIPLKGLIFAVVNSDT-NTLAPIGSSGEL 2078


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
 Frame = +3

Query: 435 KQKEWTSFDSAHSVMEKA-KYIK-DNRLRGA----MVYSLNADDYEGKCTSKTNNTILFP 596
           K K++ SF   H  +EK  +Y+  D + +G+    ++     + YE   T  +++ I F 
Sbjct: 333 KVKKYASFK--HCPVEKLIEYMAVDKKNQGSKKRIVILKAIGETYEKHATVVSDDDIRFI 390

Query: 597 LVQSIRDTLITKSTQDVILV*AGAAQV 677
           L + ++    TKS+ DV++   G+  +
Sbjct: 391 LSRDVKVDEFTKSSWDVVVTPPGSKSI 417


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 550 MKENVLVKQITPYCSLLFNQLGT 618
           +K+   ++QI+P+ SLL NQ+ T
Sbjct: 108 LKDESTLQQISPWMSLLINQVET 130


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 241 LLEYQHMDIHLL**MQTTQILAVQLQ 318
           LL+  H+D+H +   Q TQIL V  Q
Sbjct: 679 LLQLGHIDLHKIGAFQATQILIVSKQ 704


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 504 NRLRGAMVYSLNADDYEGKCTSKTNNTILFPLVQSIRDTLITKST 638
           N  R  M+Y  N   Y      K    +LF L++++ D +  K +
Sbjct: 486 NDTRAWMIYEENLPSYLSSNFLKEEPVVLFDLLRALNDPVFVKKS 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,747
Number of Sequences: 5004
Number of extensions: 61196
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)