Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0064
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 90 2e-18
04_03_0649 - 18402976-18403220,18403305-18404499 68 8e-12
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261... 30 1.5
03_05_0920 - 28812796-28813325,28814019-28816377 29 2.7
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.5
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 8.2
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 89.8 bits (213), Expect = 2e-18
Identities = 51/181 (28%), Positives = 98/181 (54%), Gaps = 4/181 (2%)
Frame = +3
Query: 18 AIVDVSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYT 197
A +++Y + +++ +D+VNI+T+ H K + T ++PL+ + S + +Y
Sbjct: 213 ADTNLNYPIDDMSSSLDWVNIITFSLH---KNSNVTTADAPLYDKDSH------FSASYG 263
Query: 198 VNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSL----GSLGFVNYPDV 365
V +L+ GL K+V+GIP +G S+ L N D +G+P + G+ +G + Y ++
Sbjct: 264 VISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAAGTKQRKSNQIGVIAYAEI 323
Query: 366 CLFVANSNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNAD 545
++ + +V V D+ + Y Y W SFDSA V EK +++ ++L G + +++ D
Sbjct: 324 EEYLKSQSVFVTHDNQSVADYFYSGDLWVSFDSAVVVQEKVEFVAKSQLLGYFLSTISFD 383
Query: 546 D 548
D
Sbjct: 384 D 384
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 67.7 bits (158), Expect = 8e-12
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
Frame = +3
Query: 9 APXAIVDVSYDVQQINNYVDYVNIMTYDYHYY-TKYTPFTGFNSPLFSRPSESLYMGTLN 185
AP A VD Y + + +D+VN+M + T F++PL+ R S +
Sbjct: 209 APFAGVD--YPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLYDRASH------YS 260
Query: 186 VNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSP--ASGYGSLGS--LGFVN 353
+Y V +L+ G+ K+V+GIP YG S+ L N N +G+P A+G GS G ++
Sbjct: 261 ASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATGAMS 320
Query: 354 YPDVCLFVANSN-----VRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRG 518
Y +V A + V +D+ + Y+ W +FD V EK + L G
Sbjct: 321 YAEVQWLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCGLLG 380
Query: 519 AMVYSLNADD 548
++ +N DD
Sbjct: 381 YFLWPVNYDD 390
>11_01_0349 -
2614682-2614721,2614881-2614955,2615346-2615538,
2615654-2616287
Length = 313
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 378 ANSNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRL 512
A+ + + F+D A P+ ++ WTS S ++Y+K+ RL
Sbjct: 72 ADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRL 116
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 222 LDRDKIVVGIPTYGHSFTLVNAD-NPNIGSPASGYGSLGSLGFVNYPD 362
L + + +PT+ LV A+ NPNIG A G G N PD
Sbjct: 437 LSNNNLYGKLPTFAAKNVLVKANGNPNIGKDAPAPSGSGGSGGSNAPD 484
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 144 FSRPSESLYMGTLNVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGY 323
FS+ +E + LN++ V +YL+K D +++ ++ L D P + A
Sbjct: 1310 FSKLNEDSFACILNLHNLVELYLSKAYDGKELIFHATSFPKLKLLAVWDAPYLRKVAIQQ 1369
Query: 324 GSLGSL 341
G+L SL
Sbjct: 1370 GALQSL 1375
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/77 (29%), Positives = 32/77 (41%)
Frame = +3
Query: 177 TLNVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNY 356
TL + N Y+ KGL KIVV P T + DN IG+ A ++G F
Sbjct: 1423 TLELEGDSNDYVGKGLSGGKIVVYPP---RDSTFIPEDNIVIGNVALYGATIGEAYFNGM 1479
Query: 357 PDVCLFVANSNVRVIFD 407
V NS + + +
Sbjct: 1480 AAERFCVRNSGAQAVVE 1496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,104
Number of Sequences: 37544
Number of extensions: 349433
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -