Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0064
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 7e-22
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 93 1e-19
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 3e-19
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 92 5e-19
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 49 3e-06
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 33 0.29
SB_41073| Best HMM Match : GRP (HMM E-Value=2.8) 32 0.39
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1) 31 1.2
SB_47681| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 29 3.6
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 29 4.8
SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15) 29 4.8
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20) 28 6.3
SB_25995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_36478| Best HMM Match : TatD_DNase (HMM E-Value=1.3) 28 6.3
SB_17581| Best HMM Match : HHH (HMM E-Value=4.2) 28 6.3
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 28 8.4
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 101 bits (241), Expect = 7e-22
Identities = 56/187 (29%), Positives = 96/187 (51%)
Frame = +3
Query: 3 VAAPXAIVDVSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTL 182
V+A VD +Y+V ++ +D++N+MTYD H + P+TG ++ L P + L
Sbjct: 566 VSAGHGTVDAAYEVHKLAGILDWINLMTYDLH--GPWEPYTGHHTALVGPPGDKL----- 618
Query: 183 NVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPD 362
V+Y V ++ KG+ KI +G+ YGH+F L + +G+PA+ + Y +
Sbjct: 619 TVSYAVKYWMEKGMPCGKIALGMANYGHAFELSDPTKTALGAPAN----VNKGRSYPYYE 674
Query: 363 VCLFVANSNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNA 542
+C + D+ AK PY Y +W ++D S+ K + IK L GAM ++++
Sbjct: 675 LCKLPLTK----VTDNPAKAPYGYHGSQWIAYDDVTSLGRKVELIKKENLLGAMFWAIDL 730
Query: 543 DDYEGKC 563
DD+ C
Sbjct: 731 DDFGNVC 737
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 93.5 bits (222), Expect = 1e-19
Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 5/212 (2%)
Frame = +3
Query: 3 VAAPXAIVDVSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTL 182
VAA A +D +Y+V +I +D +N+M YD + P TG ++ L P E L
Sbjct: 297 VAAGKATIDKAYEVDKIGQILDLINLMAYDLR--GMWEPETGHHTALEGPPGEEL----- 349
Query: 183 NVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSL----GFV 350
V++ +++KG KI +G+ TYG +F L + + +PA+G + G GF+
Sbjct: 350 TVSFAAQYWIDKGAPASKIALGLGTYGRAFKLADQTRHGLKAPANGNPTRGQYTREPGFL 409
Query: 351 NYPDVCLFVANSNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKA-KYIKDNRLRGAMV 527
Y ++C N V K PY + W +D +S+ K + IK + GAM
Sbjct: 410 AYYEICKM--NLQVTSTESSAVKAPYGHVGDLWVGYDDEYSLSLKVERVIKAKGMAGAMF 467
Query: 528 YSLNADDYEGKCTSKTNNTILFPLVQSIRDTL 623
+++ DD++G+ K +PL+ ++++ L
Sbjct: 468 WAIPLDDFKGQFCGKGP----YPLINAVKEYL 495
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 92.7 bits (220), Expect = 3e-19
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 4/191 (2%)
Frame = +3
Query: 3 VAAPXAIVDVSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTL 182
V+A V Y++ + +D++N+M+YD H + T TG ++ + S + L
Sbjct: 184 VSAGETTVKNGYEISALGQALDWINLMSYDLHGDWEDT--TGHHAAMDSSTGDPL----- 236
Query: 183 NVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGS---LGSLGFVN 353
V + V++++ G+ +KI +GIP YG SFTL A N + +PA+ G G++
Sbjct: 237 TVTHAVDLWIAGGMPSNKIALGIPLYGRSFTLKTA-NKTLDAPATKGGQGPYTKEAGYIA 295
Query: 354 YPDVCLFVANSNVRVIFDDHAKVPY-LYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVY 530
Y ++C + V D PY + +W +D SV EK YIK L GAM +
Sbjct: 296 YFEIC----KMGLSVTRDPVLVSPYGVDVNNQWVGYDDVTSVQEKVNYIKKKSLLGAMFW 351
Query: 531 SLNADDYEGKC 563
+++ DD++G C
Sbjct: 352 AMDLDDFKGDC 362
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 91.9 bits (218), Expect = 5e-19
Identities = 61/213 (28%), Positives = 113/213 (53%), Gaps = 6/213 (2%)
Frame = +3
Query: 3 VAAPXAIVDVSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSE-----SL 167
VAA + +YD++ I+ +D++N+MTYD H + P TG ++ + + ++
Sbjct: 573 VAAGLWTIKDAYDIEGISKPLDWINVMTYDLH--GTWEPKTGHHTAMGPDGDKLTLPFAI 630
Query: 168 YMGTLNVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGF 347
+ N + + G+ +KIV+G+ TYG +F L +A N G A Y G+ GF
Sbjct: 631 WYWMNNRDTWEKPGIRNGMPANKIVLGLGTYGRAFGLESAGNN--GLDAGKY--TGAKGF 686
Query: 348 VNYPDVCLFVANSNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKA-KYIKDNRLRGAM 524
+ Y ++C + V+ ++ AK PY YK +W FD+ S++ K +K N+LRG M
Sbjct: 687 LAYFEIC----KMGLTVVENNKAKAPYGYKGHDWVGFDNPKSLIYKIDNVVKKNQLRGVM 742
Query: 525 VYSLNADDYEGKCTSKTNNTILFPLVQSIRDTL 623
++++ DD+ G+ + +PL+ ++++ L
Sbjct: 743 FWAIDLDDFSGEHCGQGK----YPLMSAVKNYL 771
Score = 71.3 bits (167), Expect = 7e-13
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 6/214 (2%)
Frame = +3
Query: 3 VAAPXAIVDVSYDVQQINNYVDYVNIMTYDYH----YYTKYTPFTGFNSPLFSRPSESLY 170
VAA + +YD+ I +D++N+MTYD H Y T + G + + P Y
Sbjct: 188 VAAGLWTIKGAYDIADIAEPLDWINLMTYDLHGTWEYKTGHHTAMGPDGDKLTLPFAIWY 247
Query: 171 MGTLNVNYTVNMYLNKGLDRDKIVVGIPTYG-HSFTLVNADNPNIGSPASGYGSLGSLGF 347
N + + KG+ +KIV+ P G HS +A+ GF
Sbjct: 248 WMN-NRDTWEKPGIRKGMPANKIVLAWPLMGVHSGKYTDAE-----------------GF 289
Query: 348 VNYPDVCLFVANSNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKA-KYIKDNRLRGAM 524
+ Y ++C + V+ + A PY YK K+W FD +S++ K +K N+LRG M
Sbjct: 290 LAYYEIC----KRGLTVVHKNKANAPYGYKGKDWIGFDDPNSLVYKIDNVVKKNQLRGVM 345
Query: 525 VYSLNADDYEGKCTSKTNNTILFPLVQSIRDTLI 626
++++ DD+ G+ + +PL+ ++++ LI
Sbjct: 346 FWAIDLDDFSGEHCGQGK----YPLMSAVKNYLI 375
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Frame = +3
Query: 300 IGSPASGYGSLGSL----GFVNYPDVCLFVANSNVRVIFDDHAKVPYLYKQKEWTS---- 455
IG+PA+G G GF++Y ++C + + PY Y +++W
Sbjct: 5 IGAPANGNPPRGPYTRESGFLSYYEICDMMPKMKTMKTDQSEVRAPYGYVKQDWADVWVG 64
Query: 456 FDSAHSVMEKAK-YIKDNRLRGAMVYSLNADDYEGKCTSKTNNTILFPLVQSIRDTL 623
+D S+ K + IK L GAM ++L+ DD++G K N +PL+ +++ L
Sbjct: 65 YDDERSLQLKVEEVIKAKGLAGAMFWALDLDDFDGSSCGKGN----YPLMNAVKKYL 117
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +3
Query: 9 APXAIVDVSYDVQQINNYVDYVNIMTYDYHYYTKYTP-FTGFNSPLFSRPSESLYMGTLN 185
+P I YD++ I + VD++ IM YD K P NSP Y TL
Sbjct: 162 SPDCIDGRCYDLKAIVDIVDFMVIMAYDQQSQIKEGPCIAKANSP---------YSQTLE 212
Query: 186 VNYTVNMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPN 299
V YL + +K+V+G+P YG+ + D N
Sbjct: 213 ---GVQQYLKLNISNNKLVLGLPWYGYDYPCEEIDEKN 247
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -1
Query: 544 SAFNEYTIAPRSLLSFIYFAFSMTL*AESNEVHSFCLY 431
SA+N YT++ R+LL +I AF+ TL +H C+Y
Sbjct: 1639 SAYNIYTLSVRTLL-YIVSAFTSTLSVRITSIHCQCVY 1675
>SB_41073| Best HMM Match : GRP (HMM E-Value=2.8)
Length = 305
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 279 VNADNPNIGSPASGYGSLGSLGFVNYPDVCLFV-ANSNVRVIFDDHAK 419
V+ +NPNIG PA Y + FV Y +C+++ + + V++ ++ K
Sbjct: 212 VSVNNPNIGMPAYDYSEWSAWFFVVYLVLCMYIFVSIFLAVVYKNYRK 259
>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
Length = 1318
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +3
Query: 81 MTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMYLNKGLDRDKIVVGIPTY 260
+ +DY+YY+ TP GF+S +P E N NMY+ L +++G
Sbjct: 632 LVFDYYYYSTNTPVLGFDSKPNPKPHE-------NHPPFQNMYVYSNLTDGNLILGSEVR 684
Query: 261 GHSFTLVNADNPNIGS 308
+ N P G+
Sbjct: 685 NVLRVMANEGVPGSGA 700
>SB_47681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Frame = +3
Query: 105 TKYTPFTGFN---SPLFSRPSESLYMGTLNVNYTVNMYLNKGLDRDKIVVGIPTYGHSFT 275
T+Y P N S L R + Y+ NY + +G + + + YG S
Sbjct: 435 TRYLPLARTNYGKSSLIYRGPNTRYLPLARTNYGKSSLRYRGPNTRYLPLARTNYGKSSL 494
Query: 276 LVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVANSNVRV 398
N P + YG SLG+ P +C + SN+ +
Sbjct: 495 RYRGPNTRYLPPRTNYGK-SSLGY-RGPVICDSLLPSNIHI 533
>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 307 LPIFGLSAFTRVNECPYVGIPTTILSRSNPLFKY 206
LPI GLS++ RV+ +GIP I+ P+ Y
Sbjct: 668 LPIIGLSSYHRVSHFLSLGIPLPIIGIPLPIIGY 701
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 319 PEAG--LPIFGLSAFTRVNECPYVGIPTTIL 233
P +G LPI GLS+ RV+ P GIP I+
Sbjct: 287 PSSGIPLPIIGLSSHHRVSHFPSSGIPLPII 317
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 3 VAAPXAIVDVSYDVQQINNYVDYVNIMTYDYH 98
V+A V Y++ + +D++N+M+YD H
Sbjct: 108 VSAGETTVKNGYEISALGQALDWINLMSYDLH 139
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 489 KYIKDNRLRGAMVYSLNADDYEGKCTSKTNNTILFPLVQSIRD 617
+Y D+R A++ SLN Y G C KTNN IL +Q D
Sbjct: 113 RYKCDSRELSAVLDSLN---YLGTCAWKTNNRILDLAIQVFND 152
>SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15)
Length = 944
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 489 KYIKDNRLRGAMVYSLNADDYEGKCTSKTNNTILFPLVQSIRD 617
+Y D+R A++ SLN Y G C KTNN IL +Q D
Sbjct: 590 RYKCDSRELSAVLDSLN---YLGTCAWKTNNRILDLAIQVFND 629
>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
Length = 1557
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +3
Query: 81 MTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMYLNKGLDRDKIVVGIPTY 260
+ +D++YY++ P GF+S +P E N NMY+ L +V+G +
Sbjct: 873 LVFDHYYYSRNKPVLGFDSKPNPKPHE-------NHPPFKNMYVYPNLTDGNLVLGSEVH 925
Query: 261 GHSFTLVNADNPNIGS 308
+ N P G+
Sbjct: 926 NVLRVMANEGVPGGGA 941
>SB_25995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 207 YLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGS-PASGYGSLGSLGFVNYPD 362
+L++ L + K V+ + Y +V A + S P GY S+ GF + PD
Sbjct: 467 HLHEALHKTKSVIPVEAYTREACMVEALDYGFTSVPDYGYTSVPDYGFTSVPD 519
>SB_36478| Best HMM Match : TatD_DNase (HMM E-Value=1.3)
Length = 489
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 528 YSLNADDYEGKCTSKTNNTILFPLVQSIRDTLITKSTQDVIL 653
Y + + +G ++NN +L +QS+ TL + TQD+++
Sbjct: 315 YGICFANSQGMLAKRSNNPMLLQFLQSLPKTLSGQHTQDLVV 356
>SB_17581| Best HMM Match : HHH (HMM E-Value=4.2)
Length = 361
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 294 PNIGSPASGY-GSLGSLGFVNYPDVCLFVANSNV 392
P P +G S+G L + +YPD+C + N+ V
Sbjct: 167 PTASQPGNGLVKSVGRLKYYSYPDMCNMLVNAGV 200
>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 273 TLVNADNPNIGSPASG-YGSLGSL 341
+L N D+ N+GS +G YG+LGSL
Sbjct: 359 SLTNGDHGNLGSLTNGYYGNLGSL 382
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 81 MTYDYHYYTKYTPFTGFNSPLFSRPSES 164
+ +DY+YY++ P G++S +P E+
Sbjct: 1192 LVFDYYYYSRNKPVLGYDSKPNPKPHEN 1219
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,122,659
Number of Sequences: 59808
Number of extensions: 441102
Number of successful extensions: 1043
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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