Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0064
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 81 9e-16
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 77 1e-14
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 71 1e-12
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 70 2e-12
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 66 3e-11
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 66 3e-11
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 63 2e-10
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 54 1e-07
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 49 3e-06
At4g21230.1 68417.m03070 protein kinase family protein contains ... 29 3.0
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 27 9.0
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 80.6 bits (190), Expect = 9e-16
Identities = 47/176 (26%), Positives = 84/176 (47%)
Frame = +3
Query: 30 VSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMY 209
V Y V + + +D+VN+M YD+ Y ++ TG + LF PS + G +
Sbjct: 189 VLYPVSAVASSLDWVNLMAYDF-YGPGWSRVTGPPAALFD-PSNAGPSGDAGTR----SW 242
Query: 210 LNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVANSN 389
+ GL K V+G P YG+++ L NA++ + +P +G ++ G + Y + F+ ++
Sbjct: 243 IQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTG-AAISPDGSIGYGQIRKFIVDNG 301
Query: 390 VRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNADDYEG 557
+++ Y Y W +D S++ K +Y K L G + + ADD G
Sbjct: 302 ATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSG 357
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 76.6 bits (180), Expect = 1e-14
Identities = 46/173 (26%), Positives = 85/173 (49%)
Frame = +3
Query: 30 VSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMY 209
V + V + + +D+VN++ YD+ Y + + T +PL+ P + G V +
Sbjct: 187 VLHPVNAVADSLDWVNLVAYDF-YESGSSRVTCSPAPLYD-PITTGPSGDAGVR----AW 240
Query: 210 LNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVANSN 389
GL K V+G P YG+++ L +A N N + +SG ++ G + Y + F+ ++
Sbjct: 241 TQAGLPAKKAVLGFPLYGYAWCLTDAKNHNYYANSSG-PAISPDGSIGYDQIRRFIVDNK 299
Query: 390 VRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNADD 548
++++ + Y Y +K W +D S++ K KY K L G + + ADD
Sbjct: 300 ATMVYNSNLVQNYCYAKKTWIGYDDNQSIVMKVKYAKQRGLLGYFSWHIGADD 352
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 70.5 bits (165), Expect = 1e-12
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Frame = +3
Query: 30 VSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGT--LNVNYTVN 203
V Y V I+N +D++N+M YD+ Y ++ TG P SLY+ T + + V
Sbjct: 168 VPYPVLAISNSLDWINLMAYDF-YGPGWSTVTG--------PPASLYLPTDGRSGDSGVR 218
Query: 204 MYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVAN 383
+ GL K V+G P YG ++TL + D + +G ++ G ++Y + ++ +
Sbjct: 219 DWTEAGLPAKKAVLGFPYYGWAWTLADPDVNGYDANTTG-PAISDDGEISYRQLQTWIVD 277
Query: 384 SNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNADD 548
+ + DD Y Y W +DS S++ K Y K L G + + DD
Sbjct: 278 NGATKVHDDMMVGDYCYAGTTWIGYDSEKSIVTKVIYAKQKGLLGYFSWHVGGDD 332
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 1/173 (0%)
Frame = +3
Query: 30 VSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMY 209
V Y V+ I + +D+VNIM YD+ Y ++P TG + LF PS + N + +
Sbjct: 185 VEYPVKAIADNLDFVNIMAYDF-YGPGWSPVTGPPAALFHDPSNP---AGRSGNSGLRKW 240
Query: 210 LNKG-LDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVANS 386
L++ L K V+G P G ++TL +A+N + G ++ G + Y + ++ ++
Sbjct: 241 LDEAKLPPKKAVLGFPYCGWAWTLEDAENNGYDAATDG-AAISPDGSITYAKIRNYIVDN 299
Query: 387 NVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNAD 545
D Y Y W +D S++ K KY K L G + + AD
Sbjct: 300 GAATFHDPAVIGFYCYVGNTWIGYDDNQSIVYKVKYAKFTGLLGYFSWHVGAD 352
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 65.7 bits (153), Expect = 3e-11
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Frame = +3
Query: 30 VSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGT--LNVNYTVN 203
V Y V+ I+ +D+VNI YD+ Y T TG P +LY+ + + + V
Sbjct: 81 VVYPVKFISELLDWVNIKAYDF-YGPGCTEVTG--------PPAALYLQSDGPSGDSGVK 131
Query: 204 MYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVAN 383
+++ GL +K V+G P YG ++TL + N +G ++ G ++Y + ++ +
Sbjct: 132 DWIDAGLPAEKAVLGFPYYGWAWTLADPKNHGYYVDTTG-PAISDDGEISYSQLKTWIVD 190
Query: 384 SNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNADD 548
+ + D+ Y Y W +DS S++ K Y K L G + + DD
Sbjct: 191 NKATTVHDNIVIGDYCYAGTTWIGYDSEESIVTKVIYAKQKGLLGYFSWQVGGDD 245
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/170 (26%), Positives = 78/170 (45%)
Frame = +3
Query: 36 YDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMYLN 215
Y VQ I + +D+VNIM YD+ Y ++P TG + LF + + G + ++ +L
Sbjct: 179 YPVQAIADNLDFVNIMAYDF-YGPGWSPVTGPPAALFDPSNPAGRSG----DSGLSKWLE 233
Query: 216 KGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVANSNVR 395
L K V+G G ++TL +A+N + G ++ S G + Y + ++ ++
Sbjct: 234 AKLPAKKAVLGFSYCGWAWTLEDAENNGYDAATDG-AAISSDGSITYAKIRNYIIDNGAA 292
Query: 396 VIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNAD 545
D Y Y W +D S++ K +Y K L G + + AD
Sbjct: 293 TFHDPAVIGFYCYVGTTWIGYDDNQSIVSKVRYAKLKGLLGYFSWHVGAD 342
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 62.9 bits (146), Expect = 2e-10
Identities = 45/176 (25%), Positives = 80/176 (45%)
Frame = +3
Query: 30 VSYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMY 209
VSY +++I +D+VN++ YD+ Y+ T G + LF + G +Y + +
Sbjct: 178 VSYPIREIKKKLDWVNLIAYDF--YSSSTTI-GPPAALFDPSNPKGPCG----DYGLKEW 230
Query: 210 LNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVANSN 389
+ GL K V+G P G +++L + ++ A+ + + G +NY + + +
Sbjct: 231 IKAGLPAKKAVLGFPYVGWTWSLGSGNDA-----ATSRVATSAEGSINYDQIKRLIVDHK 285
Query: 390 VRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEKAKYIKDNRLRGAMVYSLNADDYEG 557
R +FD Y + +D SV+ K KY K L G + + ADD G
Sbjct: 286 ARPVFDSTVVGDYCFAGTSLIGYDDHQSVVAKVKYAKQKGLLGYFSWHVGADDNFG 341
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 53.6 bits (123), Expect = 1e-07
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Frame = +3
Query: 33 SYDVQQINNYVDYVNIMTYDYHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYT----V 200
+Y VQ + +D+VNI+ YD+ Y P + S F+ P+ L++ + N + +
Sbjct: 181 TYPVQVMRESLDWVNIIAYDF-----YGPVS---SSKFTVPTAGLHVSSNNEGPSGDSGL 232
Query: 201 NMYLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGS----LGSLGFVNYPDVC 368
++ GL K V+G G ++TL N + + A+G + G +NY +
Sbjct: 233 KQWIKDGLPEKKAVLGFSYVGWAWTLQNDKDTGYNAAAAGVAKSEDDVSEDGSINYAQIN 292
Query: 369 LFVANSNVRVIFDDHAKVPYLYKQKEWTSFDSAHSVMEK 485
F+ + ++D Y + +K W ++ SV K
Sbjct: 293 KFIRDEEAAKVYDPKVVGHYCFAKKIWIGYEDTQSVEAK 331
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 49.2 bits (112), Expect = 3e-06
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Frame = +3
Query: 30 VSYDVQQINNYVDYVNIMTYD-YHYYTKYTPFTGFNSPLFSRPSESLYMGTLNVNYTVNM 206
VSY VQ IN +D+VN++ Y+ Y T+ P G P P G + +
Sbjct: 159 VSYPVQAINRSLDWVNLIAYEFYGLTTEIGPPAGLYDPSIKGP-----CGDTGLKH---- 209
Query: 207 YLNKGLDRDKIVVGIPTYGHSFTLVNADNPNIGSPASGYGSLGSLGFVNYPDVCLFVANS 386
+L GL K V G P G S+TL + + + ++ + G +NY + F+
Sbjct: 210 WLKAGLPEKKAVFGFPYVGWSWTLDDDKDHGDDVAVTHRVAVTANGSINYDQIVKFITEY 269
Query: 387 NVRVIFD 407
R ++D
Sbjct: 270 KARTVYD 276
>At4g21230.1 68417.m03070 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 642
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 511 SLLSFIYFAFSMTL*AESNEVHSFCLYK*GTFA*SSNITLTL 386
S SF + F +T ++ VH+ C Y G F +++ +L L
Sbjct: 10 SFFSFFFLTFFVTYAQQNVTVHTICYYDGGNFTSNTSYSLNL 51
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 111 YTPFTGFNSPLFSRPSESLYMGTLNVNYTVNMYLNKGLDRDKIVVGIPTYGHSFTL 278
YTP + +SPL E + G +N++ N ++ + K ++ + GHS TL
Sbjct: 60 YTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTL 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,667,090
Number of Sequences: 28952
Number of extensions: 299820
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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