Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0063
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 30 0.28
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 29 0.64
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 28 1.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.6
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 3.4
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 4.5
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 26 6.0
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.9
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 25 7.9
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 7.9
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 30.3 bits (65), Expect = 0.28
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 414 NSGVLXAEQYGFDGIDLAWQFPSVXEHTP-SVFLMTTVRVAFGYHTRILILLAXKLLTSS 590
++G++ A Y + I LA+ F + H+ S ++++ + F ++ +IL L + S
Sbjct: 418 HTGLILALFYLTNLIALAFSFRAAATHSKLSSEDLSSIEIVFIWYAQILWYL---VFIVS 474
Query: 591 XRISXXXLLGTYHWMTFAGLCT 656
+S LG+ +W+T + LCT
Sbjct: 475 VILSIYFQLGSTYWVTLSYLCT 496
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 300 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 428
AK G ++ VGG ++ E EK + ++++ A A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 403 LLSLIPECXWLNNMXSMELTSP 468
L +L+PE W NNM EL +P
Sbjct: 227 LQALLPEVAWKNNMNQWELLNP 248
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +3
Query: 144 LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTV 323
+P+ D T L GY + D L L+ +L I R HD Y + + Y +
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHYLSMIY 1184
Query: 324 L 326
L
Sbjct: 1185 L 1185
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 198 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSXKVLCC 82
S+ GC +TE+ T+ C E SCC S K CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -1
Query: 466 ARSIPSXPYC--SAXSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 308
A S PS P S STP + ++ + + Y +SVS+ PP ++ V PG
Sbjct: 277 ATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAY--SASVSSQPPLTHSYVHPG 329
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 258 DRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSG 422
D+ D+ + TS + + +GG TEE + YN+ +E +A T +IN G
Sbjct: 320 DKFVDSLNSWTSELTHCKNIILTPHIGGS--TEEAQ-YNIGIEVSEALTRYINEG 371
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 80 PQQSTLXLRQQELCQRISSPHAAVGPRSRSVVLHPLAVRL 199
P Q + L +++C R+ + H G S +L+ L RL
Sbjct: 35 PHQDSKNLLYRQICGRLLAQHVFGGAGSTQPILNQLCKRL 74
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 689 FSGLKDWILVSGTETRESHPMIGP 618
F G +D+ L+ GT+ P IGP
Sbjct: 362 FDGFQDYCLMCGTDFTSRIPKIGP 385
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 321 VLLSVGGDADTEEPEKYNLLLESQQARTAFINS 419
++ VGG+AD + E +LL + +A +N+
Sbjct: 348 IVPQVGGEADVDPKEYMEMLLSTYKASKELVNT 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,928
Number of Sequences: 5004
Number of extensions: 51875
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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