Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0063
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       49   3e-06
04_03_0649 - 18402976-18403220,18403305-18404499                       46   3e-05
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    34   0.12 
06_01_0775 - 5795329-5795801,5796582-5796720,5796810-5797049,579...    28   6.2  
03_01_0436 + 3384526-3385236,3387857-3388720                           28   6.2  
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    28   8.2  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
 Frame = +3

Query: 288 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLXAEQYGFDG 455
           +S+K+   G  V  +LS+G D   E+     ++ +   +  R AFINS +  A   GFDG
Sbjct: 98  SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157

Query: 456 IDLAWQFPS 482
           +DLAW+FP+
Sbjct: 158 LDLAWRFPA 166


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
 Frame = +3

Query: 117 YVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSL 296
           Y   + A + PL    A S  THL Y    + P    L+   +        D  RA+   
Sbjct: 45  YYLAADAHLRPLAALDA-SMYTHLYYYAVAVHPARRTLLLPPDPAAASLLGDFSRAV--- 100

Query: 297 KAKYPGLTVLLSVGGD---------ADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGF 449
           KAK   +  +LS+G           A +     +  +     +R AFI + V  A + GF
Sbjct: 101 KAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGF 160

Query: 450 DGIDLAWQFP-SVXEHTPSVFLMTTVRVA 533
           DG+D+AW+FP S  E     FL+   R A
Sbjct: 161 DGLDVAWRFPASAVEMAEFGFLVAEWRAA 189


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 147 PLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT 290
           PL+LDP      H+L  Y   +  TY LV     + +D  HDNY+ I+
Sbjct: 679 PLELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725


>06_01_0775 -
           5795329-5795801,5796582-5796720,5796810-5797049,
           5797278-5797313,5797421-5797501,5797937-5797994,
           5799440-5799630
          Length = 405

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 570 WPAVSGSWYDTQMPPSPLSSGRRKAYV 490
           WP   G +Y    PPSP ++G R   V
Sbjct: 2   WPGCGGRFYWAPAPPSPSAAGARGVVV 28


>03_01_0436 + 3384526-3385236,3387857-3388720
          Length = 524

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 165 ALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYR--AITSLKAKYPGLTVLLS 332
           A+    HLL  +A    +TY LV   EN+ ++    NYR   +T+   +  G  VLLS
Sbjct: 228 AIDLAKHLLQVHA----ETYALVVSTENITLNAYMGNYRPMLVTNTLFRMGGAAVLLS 281


>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 512 DDNG--EGGIWVSYQDPDTAGXXAAYXKXKNLGGXAIGD 622
           D+NG  EGG  VS +DPD      A    K+ G  A GD
Sbjct: 179 DENGKTEGGEVVSPEDPDKQSADDAPTDGKDTGDQASGD 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,752,366
Number of Sequences: 37544
Number of extensions: 388182
Number of successful extensions: 1069
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)