Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0063
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 9e-17
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 82 5e-16
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 69 5e-12
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 58 9e-09
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 40 0.003
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 31 0.90
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 30 1.6
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 30 1.6
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 6.3
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 84.2 bits (199), Expect = 9e-17
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Frame = +3
Query: 99 YYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNY 278
Y+ + + R + LP D+DP L CTH++Y +A I P T K+ + N DR Y
Sbjct: 403 YFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWN--DDRL---Y 455
Query: 279 RAITSLKAKYPGLTVLLSVGGDADTEEP-EKYNLLLESQQARTAFINSGVLXAEQYGFDG 455
+ I LK K P L LL+VGG P ++ ++ S+ RT FI+S + +++Y FDG
Sbjct: 456 KEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFDG 515
Query: 456 IDLAWQFPSVXEHTP 500
DL W++P+ ++P
Sbjct: 516 FDLDWEYPASRGNSP 530
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 527 GGIWVSYQDPDTAGXXAAYXKXKNLGGXAIGDLSLDDF 640
G W++Y D + G K +NL G + LDDF
Sbjct: 696 GSQWIAYDDVTSLGRKVELIKKENLLGAMFWAIDLDDF 733
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 81.8 bits (193), Expect = 5e-16
Identities = 43/134 (32%), Positives = 70/134 (52%)
Frame = +3
Query: 99 YYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNY 278
YY + S R P D+DP L CTH+L+ +A + T+KL EN H+ Y
Sbjct: 26 YYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHELY 78
Query: 279 RAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGI 458
+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + +GFDG+
Sbjct: 79 QRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDGL 138
Query: 459 DLAWQFPSVXEHTP 500
DL W++P + +P
Sbjct: 139 DLDWEYPGMRGGSP 152
Score = 70.9 bits (166), Expect = 9e-13
Identities = 38/134 (28%), Positives = 67/134 (50%)
Frame = +3
Query: 99 YYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNY 278
YY + S R P D+DP L CTH+++ ++ + T+ + +N D Y
Sbjct: 411 YYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-----DFDLY 463
Query: 279 RAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGI 458
+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + GFDG+
Sbjct: 464 KRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDGL 523
Query: 459 DLAWQFPSVXEHTP 500
DL W++P + +P
Sbjct: 524 DLDWEYPGMRGGSP 537
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 68.5 bits (160), Expect = 5e-12
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Frame = +3
Query: 99 YYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGI-QPDTYKLVSLNENLDIDRTHDN 275
Y+ + S R+ +A+ P D+ PA CTHL+Y +A I Q + + N+ D+ +
Sbjct: 24 YHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLYPR 77
Query: 276 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDG 455
+ A LK K P L LL+VGG ++ ++++ R FI+S + +GFDG
Sbjct: 78 FNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGFDG 134
Query: 456 IDLAWQFPSVXEHTP 500
+DL W++P+ +P
Sbjct: 135 LDLDWEYPATRGGSP 149
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +3
Query: 168 LSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN--YRAITSLKAKYPGLTVLLSVGG 341
+ T LL G+A + + L + +D+ Y+ LK K PGL LL+VGG
Sbjct: 149 MQLLTLLLLGFASFAAASNYVHRCRHTLAMFEWNDDKLYKEFNDLKLKNPGLKTLLAVGG 208
Query: 342 DADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDLAWQFP 479
++ ++ + +R FI+S + Q+ FDG DL W++P
Sbjct: 209 WNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDGFDLDWEYP 254
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 57.2 bits (132), Expect = 1e-08
Identities = 39/134 (29%), Positives = 64/134 (47%)
Frame = +3
Query: 99 YYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNY 278
YY + + R A+ P ++DP+L CTH++Y +A + D KL N D Y
Sbjct: 27 YYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN---DAAM--Y 78
Query: 279 RAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGI 458
+ + LK+ + LL+VGG P + ++ + R FI+ +L + FDG+
Sbjct: 79 KKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDGL 135
Query: 459 DLAWQFPSVXEHTP 500
DL W++P P
Sbjct: 136 DLDWEYPGARGSPP 149
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 536 WVSYQDPDTAGXXAAYXKXKNLGGXAIGDLSLDDFRG 646
WV Y D + Y K K+L G + LDDF+G
Sbjct: 324 WVGYDDVTSVQEKVNYIKKKSLLGAMFWAMDLDDFKG 360
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +3
Query: 276 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDG 455
Y+ + LK+ + LL+VGG P + ++ + R FI+ +L + FDG
Sbjct: 2 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58
Query: 456 IDLAWQFPSVXEHTP 500
+DL W++P P
Sbjct: 59 LDLDWEYPGARGSPP 73
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -1
Query: 493 CSXTLGNCQARSI--PSXPYCSAXSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 326
C T G + + P P C A S+ E + ++R D RR+ F G V PP N
Sbjct: 369 CLETRGRPHEKVVYGPDIPICVAASSSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 428
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = -1
Query: 493 CSXTLGNCQARSI--PSXPYCSAXSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 326
C T G + + P P C A S E + ++R D RR+ F G V PP N
Sbjct: 168 CLETRGRPHEKVVYGPDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = -1
Query: 493 CSXTLGNCQARSI--PSXPYCSAXSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 326
C T G + + P P C A S E + ++R D RR+ F G V PP N
Sbjct: 168 CLETRGRPHEKVVYGPDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = -1
Query: 493 CSXTLGNCQARSI--PSXPYCSAXSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 326
C T G + + P P C A S E + ++R D RR+ F G V PP N
Sbjct: 168 CLETRGRPHEKVVYRPDIPICVAASPSEFVSSIRIWISDDRGRRVDFKGKPVRLCPPPAN 227
>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 273 CRVFGLCPGSRLRTPAYRCQAGYRHSRTASGCRTTERDRGPTAAC 139
CR+FG + L YR Q Y+H+R C T E+ R C
Sbjct: 483 CRLFGAIFDNSLGKTRYRSQ--YKHTRRRHPCSTCEQYRSRNRNC 525
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 494 YAFRLPDDNGEGGIWVSYQDPDTAGXXAAYXKXKNLGGXAI 616
+ ++ PD + +G V+Y+DP TA + K+ G +I
Sbjct: 208 WIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSI 248
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 270 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 377
DNY + + YP T V+LS GDA T +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,932
Number of Sequences: 59808
Number of extensions: 435899
Number of successful extensions: 1083
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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