Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0061
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467...    29   3.8  
06_01_0868 - 6606913-6607000,6607516-6608010,6610313-6610761,661...    27   8.7  

>06_01_0645 +
           4670966-4671021,4671128-4671177,4671270-4671350,
           4671862-4672078,4673220-4673607,4673830-4674033,
           4675174-4675334,4675401-4675586,4675732-4675963,
           4676530-4676732,4677074-4677208,4677367-4677550
          Length = 698

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -2

Query: 86  KCVLEKIIKITIYTVRSLFFKKRDKIK 6
           KC+ E +I +++ +V S+FF  R+K++
Sbjct: 498 KCLEEMLIVVSMLSVESIFFSPREKLE 524


>06_01_0868 -
           6606913-6607000,6607516-6608010,6610313-6610761,
           6610863-6610979,6611892-6612863
          Length = 706

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 372 RPGKTTSRGNQTDPLILP---VARES-INIMTYLHAVHARGARAEDTARP 235
           RPG+  +RG++ + L  P   VAR S +  +     V A  AR ED  RP
Sbjct: 563 RPGELAARGSRVEELYRPGEIVARGSRVEELYRPREVAAHSARMEDLYRP 612


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,326,735
Number of Sequences: 37544
Number of extensions: 217338
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)