Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0059
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 248 2e-66
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 246 8e-66
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 237 7e-63
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.72
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.95
07_03_1509 - 27246721-27247350 29 2.2
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 29 2.9
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.1
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369 28 6.7
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 8.9
10_08_1058 + 22608852-22609172,22609257-22610651 27 8.9
09_06_0319 - 22293869-22293906,22294539-22295808 27 8.9
08_02_0567 + 18769742-18769790,18769928-18771351 27 8.9
06_02_0084 - 11547820-11548773 27 8.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 248 bits (608), Expect = 2e-66
Identities = 116/175 (66%), Positives = 136/175 (77%)
Frame = +3
Query: 3 RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
RI+D+G K+ VD+FP CVHLVS E E +SSEALEA RI CNKY+ KN GKD FH+R+R+
Sbjct: 32 RIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRV 91
Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR + EA
Sbjct: 92 HPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEA 151
Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEHGPL 527
LRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ GR+ +DG Q HG L
Sbjct: 152 LRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 246 bits (603), Expect = 8e-66
Identities = 113/173 (65%), Positives = 135/173 (78%)
Frame = +3
Query: 3 RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
RIFD+G+K+ + DDFPLCVHLVS E E +SSEALEA RI CNKY+ K+ GKD FH+R+
Sbjct: 339 RIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLRVCA 398
Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR D A EA
Sbjct: 399 HPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEA 458
Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEHG 521
LRRAKFKFPGRQ++ S KWGFT+++RDE+ KL+ GR+ DG + HG
Sbjct: 459 LRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 237 bits (579), Expect = 7e-63
Identities = 109/163 (66%), Positives = 129/163 (79%)
Frame = +3
Query: 3 RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
RI+D+G K+ VD+F CVHLVS E E ++SEALEA RI CNKY+ K+ GKD FH+R+R+
Sbjct: 28 RIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRV 87
Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR EA
Sbjct: 88 HPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEA 147
Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDG 491
LRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ GR+ DG
Sbjct: 148 LRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 33 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 152
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 0.95
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 313 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 221
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 301 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 429
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 572 QIIHEDLSLNLPPSVERSMFRAVLHNAAVISEAAXFTQLLKL 447
QI +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 267 GKPQGTVARVRIGQPIMSVRSSD 335
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
Length = 269
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 342 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEH 518
KA +I+ RR + K+PG QK+ + G K +A+DG ++Q +
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205
Query: 519 GPLDAWRKVQ 548
L AWR ++
Sbjct: 206 AGLPAWRPMK 215
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 139 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 38
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 457 SCVKXAASL--MTAALCSTARNMDLSTLGGRFRLRSSCII 570
+CV AASL MT MD GGRFR+ + ++
Sbjct: 343 TCVLYAASLGQMTTTFIQQGMAMDTRVFGGRFRVPVASLV 382
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 267 GKPQGTVARVRIGQPIMSVRSSD 335
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +3
Query: 252 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 404
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 216 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 344
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,135,441
Number of Sequences: 37544
Number of extensions: 404871
Number of successful extensions: 1187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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