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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0059
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624...   248   2e-66
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...   246   8e-66
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...   237   7e-63
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    31   0.72 
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   0.95 
07_03_1509 - 27246721-27247350                                         29   2.2  
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008...    29   2.9  
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997...    28   5.1  
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369     28   6.7  
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    27   8.9  
10_08_1058 + 22608852-22609172,22609257-22610651                       27   8.9  
09_06_0319 - 22293869-22293906,22294539-22295808                       27   8.9  
08_02_0567 + 18769742-18769790,18769928-18771351                       27   8.9  
06_02_0084 - 11547820-11548773                                         27   8.9  

>11_01_0740 +
           6243517-6243526,6244822-6245323,6245415-6245496,
           6245741-6245821
          Length = 224

 Score =  248 bits (608), Expect = 2e-66
 Identities = 116/175 (66%), Positives = 136/175 (77%)
 Frame = +3

Query: 3   RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
           RI+D+G K+  VD+FP CVHLVS E E +SSEALEA RI CNKY+ KN GKD FH+R+R+
Sbjct: 32  RIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRV 91

Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
           HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  +       EA
Sbjct: 92  HPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEA 151

Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEHGPL 527
           LRRAKFKFPGRQKI  S+KWGFTK+ R+E+ KL+  GR+ +DG   Q    HG L
Sbjct: 152 LRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206


>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score =  246 bits (603), Expect = 8e-66
 Identities = 113/173 (65%), Positives = 135/173 (78%)
 Frame = +3

Query: 3   RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
           RIFD+G+K+ + DDFPLCVHLVS E E +SSEALEA RI CNKY+ K+ GKD FH+R+  
Sbjct: 339 RIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLRVCA 398

Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
           HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR  D   A   EA
Sbjct: 399 HPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEA 458

Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEHG 521
           LRRAKFKFPGRQ++  S KWGFT+++RDE+ KL+  GR+  DG   +    HG
Sbjct: 459 LRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score =  237 bits (579), Expect = 7e-63
 Identities = 109/163 (66%), Positives = 129/163 (79%)
 Frame = +3

Query: 3   RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
           RI+D+G K+  VD+F  CVHLVS E E ++SEALEA RI CNKY+ K+ GKD FH+R+R+
Sbjct: 28  RIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRV 87

Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
           HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR          EA
Sbjct: 88  HPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEA 147

Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDG 491
           LRRAKFKFPGRQKI  S+KWGFTK+ RDE+ +L+  GR+  DG
Sbjct: 148 LRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 33  TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 152
           T D  P C +HL SD Y   S E ++AG+  C   L K  G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -1

Query: 313  MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 221
            + CP+ + + VP  LP++P  P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655


>07_03_1509 - 27246721-27247350
          Length = 209

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +1

Query: 301 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 429
           L  P  PC      RH   RL     +P  +SSSP+++R+T  R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179


>09_03_0039 +
           11799277-11799486,11799565-11799710,11800758-11800860,
           11800996-11801182,11801299-11801392,11801530-11801683,
           11801963-11802067,11802151-11802267,11802688-11802801,
           11803171-11803260,11803875-11804057,11809196-11809550,
           11809574-11809643,11809993-11810167,11810251-11810351,
           11810390-11810516,11810639-11810716,11811926-11812270
          Length = 917

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -3

Query: 572 QIIHEDLSLNLPPSVERSMFRAVLHNAAVISEAAXFTQLLKL 447
           QI  +D + +LPP   ++ + +V+HN +  + +  +  LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725


>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
            22300591-22300660,22301632-22301726,22301917-22302048,
            22302154-22302222,22302953-22303051,22303169-22303253,
            22303353-22303453,22303660-22303728,22303861-22303901,
            22304085-22304303,22304444-22304470,22304562-22304660,
            22304898-22305106,22305382-22305485,22305753-22305894,
            22305991-22306289,22306508-22306903
          Length = 1229

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 267  GKPQGTVARVRIGQPIMSVRSSD 335
            G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111


>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
          Length = 269

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 342 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEH 518
           KA +I+   RR + K+PG QK+    + G          K      +A+DG ++Q   + 
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205

Query: 519 GPLDAWRKVQ 548
             L AWR ++
Sbjct: 206 AGLPAWRPMK 215


>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 139 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 38
           +R+ ++   P+    ELSC   ++T C H G  S
Sbjct: 85  SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118


>10_08_1058 + 22608852-22609172,22609257-22610651
          Length = 571

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 457 SCVKXAASL--MTAALCSTARNMDLSTLGGRFRLRSSCII 570
           +CV  AASL  MT         MD    GGRFR+  + ++
Sbjct: 343 TCVLYAASLGQMTTTFIQQGMAMDTRVFGGRFRVPVASLV 382


>09_06_0319 - 22293869-22293906,22294539-22295808
          Length = 435

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 GKPQGTVARVRIGQPIMSVRSSD 335
           G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365


>08_02_0567 + 18769742-18769790,18769928-18771351
          Length = 490

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = +3

Query: 252 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 404
           MR   G+  G    A +RI + I  + ++++  +AQV+EA RR  F+ PGR ++
Sbjct: 24  MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76


>06_02_0084 - 11547820-11548773
          Length = 317

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 216 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 344
           L   G DR Q GMRGA     P     RVR  +P    R   +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,135,441
Number of Sequences: 37544
Number of extensions: 404871
Number of successful extensions: 1187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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