Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0059
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   263   8e-71
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    27   8.0  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  263 bits (644), Expect = 8e-71
 Identities = 121/178 (67%), Positives = 141/178 (79%)
 Frame = +3

Query: 3   RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
           RIFDLG KRA VD FP CVH++S+E E LSSEALEA RIC NKY+VKNCGKD FH+R+R 
Sbjct: 32  RIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRK 91

Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
           HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R  +      IEA
Sbjct: 92  HPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEA 151

Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEHGPLDAW 536
            RRAKFKFPGRQ I  S+KWGFTK++R+++E++R  GRL +DG  VQ + EHGPL  W
Sbjct: 152 FRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 344 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 222
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 255 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 401
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 274 GLPNAPRIPVWSLSAPA 224
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 295 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 402
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,052
Number of Sequences: 27780
Number of extensions: 319761
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)