Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0059
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   250   6e-67
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   248   2e-66
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   247   5e-66
At4g17840.1 68417.m02661 expressed protein                             29   1.8  
At5g47870.1 68418.m05914 expressed protein                             29   3.2  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    29   3.2  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   4.2  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   5.6  
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ...    27   7.4  
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    27   7.4  
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    27   7.4  
At1g07490.1 68414.m00802 expressed protein                             27   7.4  
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ...    27   9.8  
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    27   9.8  
At5g13030.1 68418.m01494 expressed protein contains Pfam profile...    27   9.8  
At4g17130.1 68417.m02579 hypothetical protein                          27   9.8  
At2g30040.1 68415.m03653 protein kinase family protein contains ...    27   9.8  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  250 bits (612), Expect = 6e-67
 Identities = 117/175 (66%), Positives = 135/175 (77%)
 Frame = +3

Query: 3   RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
           RI+D+G KR  VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD FH+R+R+
Sbjct: 32  RIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRV 91

Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
           HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++SVR  D       EA
Sbjct: 92  HPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEA 151

Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEHGPL 527
           LRRAKFKFPGRQKI VS+KWGFTK+ R E+ KLR   R+  DG   ++   HGPL
Sbjct: 152 LRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  248 bits (607), Expect = 2e-66
 Identities = 117/175 (66%), Positives = 136/175 (77%)
 Frame = +3

Query: 3   RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
           RI+D+G KR  VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD FH+R+R+
Sbjct: 32  RIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRV 91

Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
           HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++SVR  D       EA
Sbjct: 92  HPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEA 151

Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEHGPL 527
           LRRAKFKFPGRQKI VS+KWGFTK+ R +F KLR+  R+  DG   ++   HGPL
Sbjct: 152 LRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  247 bits (604), Expect = 5e-66
 Identities = 116/175 (66%), Positives = 136/175 (77%)
 Frame = +3

Query: 3   RIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 182
           RI+D+G KR  VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD FH+R+R+
Sbjct: 32  RIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRV 91

Query: 183 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 362
           HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++SVR  D       EA
Sbjct: 92  HPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEA 151

Query: 363 LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREXGRLANDGCIVQYRPEHGPL 527
           LRRAKFKFPGRQKI VS+KWGFTK+ R ++ KLR+  R+  DG   ++   HGPL
Sbjct: 152 LRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206


>At4g17840.1 68417.m02661 expressed protein
          Length = 422

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +1

Query: 307 SPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKXAAS 480
           S S  C+  +GG   SS+L   P+ S  D+K+ + +R+     +++  LRS +K ++S
Sbjct: 19  SSSSWCSSGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSS 75


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +3

Query: 171 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 350
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 351 VIEALRRAKFKFP 389
           +IE LR    K P
Sbjct: 78  LIEILRDLNKKIP 90


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 93  SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 224
           S+A+  G  C  C+ +  K CG+    I+   HP H +++     C
Sbjct: 65  SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110



 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 90  SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 212
           S E++  G  C  C+ ++ K CG+    I    HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 69   SDEYEQLSSEALEAGRICCNKYLV 140
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 117 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 206
           + C K   K C +  F I    HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136


>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 342

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 21  KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 194
           KK   +   PL + +++ EYE         GR CCN    ++CG   +    ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308


>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 298 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 426
           +++SPS     P  L+  G   SS    +PSSS+    RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 298 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 426
           +++SPS     P  L+  G   SS    +PSSS+    RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528


>At1g07490.1 68414.m00802 expressed protein 
          Length = 107

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 352 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 453
           SS  C+VPSSSS  + RS+ ++   S +    SL
Sbjct: 48  SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81


>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
           contains similarity to CHP-rich zinc finger protein
          Length = 305

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 123 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 218
           C K   K C +    I+   HPFH +R+   L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 192 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 308
           H+ RIN +L    +D    G+ G  G  + T+ARV   Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278


>At5g13030.1 68418.m01494 expressed protein contains Pfam profile
           PF02696: Uncharacterized ACR, YdiU/UPF0061 family
          Length = 633

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 360 ALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 461
           A+ R   KF    +  +SKK G TKY ++   KL
Sbjct: 455 AMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKL 488


>At4g17130.1 68417.m02579 hypothetical protein
          Length = 747

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 364 CAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKXAASLMTAAL 498
           C V S S+P    ST+    ++ S++  SLR CV  +++ M AA+
Sbjct: 630 CVVSSGSTPPSLASTF--CILASSVSPCSLRDCVAISSTDMYAAM 672


>At2g30040.1 68415.m03653 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 463

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 300 CEHVLQYPEACQTHHAS 250
           C+ +LQ+P  CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,992
Number of Sequences: 28952
Number of extensions: 299408
Number of successful extensions: 841
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)