Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0057
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    26   0.35 
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    23   1.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   5.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.5  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.5  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 414 YGYEFGNSSDNLYLWPAYTVSKGPLMV--PIHLKRFSLSGN 298
           + YE  N +D L LW  Y  S   L+V  P + + F+LS +
Sbjct: 238 WAYEKLNVNDGLQLWVDYGCSPKKLIVGIPFYGRTFTLSNS 278


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 166 MWIDVLSHNILRKSNEHFLKIARDTNFSV 80
           ++IDV+ HN        F  I R T FSV
Sbjct: 206 IFIDVVQHNRPEFKAARFFSIDRSTLFSV 234


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 20  NEDYQYNRSYFKFN 61
           N +YQYN++Y  +N
Sbjct: 212 NFNYQYNQAYSNYN 225


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 20  NEDYQYNRSYFKFN 61
           N +YQYN++Y  +N
Sbjct: 232 NFNYQYNQAYSNYN 245


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 423  GGAYGYEFGNSSDNLYLWPAYTVSKGPLMVPIHLKRFSLSGNAD 292
            G  Y Y   N S N ++       K  + +P++ + FSL+  AD
Sbjct: 2534 GDVYDYFNANFSLNYWIEKGADPGKIVMGMPLYGQSFSLADAAD 2577


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 170 ASSSNPAKQSEDTIKL--KDNHAVSKRLQKELMELMRCSDKGISAFPESENLF 322
           A  S+  + +E  +K+  ++  A +KRLQ+  +E +R S + +   P S  +F
Sbjct: 146 AEFSSSLRLTEPQVKIWFQNRRAKAKRLQEAELEKLRLSARPL--LPPSFGIF 196


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 571 YTKPFKPASIISMARTKLPI 630
           YT P   ASI   A T LP+
Sbjct: 141 YTDPAFAASIFHAAATSLPL 160


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -3

Query: 602 MMLAGLKGFVYLVLLKDFGLTTILYVHHIKPSTYLLKYLNILSHTCQHL 456
           ++L  L   +Y++L  +        +  IK    ++  L  LSH CQ++
Sbjct: 227 VLLGDLYVTLYIILTNNQAKYCTTLIGLIKNCVIVIFELYYLSHVCQNV 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,539
Number of Sequences: 336
Number of extensions: 3587
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)