Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0057
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 182 3e-47
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 118 1e-27
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 117 1e-27
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 117 1e-27
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 99 3e-22
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 96 5e-21
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 96 5e-21
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 86 5e-18
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 85 7e-18
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 83 4e-17
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 82 7e-17
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 81 2e-16
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 69 5e-13
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 46 4e-06
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 29 0.66
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 4.7
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 26 6.1
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 6.1
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 26 6.1
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 6.1
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 6.1
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 8.1
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 182 bits (444), Expect = 3e-47
Identities = 87/155 (56%), Positives = 109/155 (70%), Gaps = 1/155 (0%)
Frame = +2
Query: 149 QNINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISAFPESE-NLFK 325
QN NPH S K S D H+V+KRL+ ELM LM + GISAFP+S+ NL
Sbjct: 6 QNQNPHTNS-----KNSSSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLH 60
Query: 326 WIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDK 505
W GTI GP +T Y G K+K+S+ FP +YPY+PP + F +P +HPNVD G ICLDILKDK
Sbjct: 61 WAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDK 120
Query: 506 WTALYDVRTVLLSIQSLLAEPNTQSPLNQQASYLW 610
W+A+Y+V+T+LLS+QSLL EPN SPLN QA+ LW
Sbjct: 121 WSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELW 155
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 118 bits (283), Expect = 1e-27
Identities = 56/129 (43%), Positives = 76/129 (58%)
Frame = +2
Query: 230 AVSKRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSY 409
A+ KR+ KE+ L R GI A P +NL + T+ GP ++ Y G K+ L L P+ Y
Sbjct: 2 ALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEY 61
Query: 410 PYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLN 589
P PP V+F+T +HPNVD G ICL LK W+ +RTVLLSIQ+L+ PN PL+
Sbjct: 62 PMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLD 121
Query: 590 QQASYLWPE 616
+ +W E
Sbjct: 122 NDVAKIWKE 130
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 117 bits (282), Expect = 1e-27
Identities = 54/126 (42%), Positives = 77/126 (61%)
Frame = +2
Query: 239 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 418
+RL ++ + + G+SA P S+N+ W I GP +T + +KL L F YP
Sbjct: 7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNK 66
Query: 419 PPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNQQA 598
PP+VKF++ FHPNV G +CLDIL+++W+ YDV +L SIQSLL +PN SP N +A
Sbjct: 67 PPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEA 126
Query: 599 SYLWPE 616
+ L E
Sbjct: 127 AQLHRE 132
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 117 bits (282), Expect = 1e-27
Identities = 53/124 (42%), Positives = 78/124 (62%)
Frame = +2
Query: 239 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 418
KR+ +EL +L + SA P ++LF W TI GP ++ YAG + LS+ FP YP+
Sbjct: 4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 419 PPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNQQA 598
PP V F T +HPN+++ G ICLDIL+D+W+ + VLLSI SLL +PN PL +
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
Query: 599 SYLW 610
++++
Sbjct: 124 AHVY 127
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 99 bits (238), Expect = 3e-22
Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Frame = +2
Query: 215 LKDNHAVSKRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLE 394
+ DN S+R+ KEL ++ + GI + ++++ G GP T Y G + + +E
Sbjct: 1 MSDNR--SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIE 58
Query: 395 FPNSYPYAPPVVKFMTPCFHPNVDT-CGLICLDILKDKWTALYDVRTVLLSIQSLLAEPN 571
P YP+ PP + F T +HPNV + G ICLDILKD+W+ +Y +++ L+S+QSLL P
Sbjct: 59 IPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPE 118
Query: 572 TQSPLNQQASYLW 610
+P + Q + ++
Sbjct: 119 PSNPQDAQVAQVY 131
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 95.9 bits (228), Expect = 5e-21
Identities = 50/118 (42%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Frame = +2
Query: 236 SKRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPY 415
S+RL KE +L I +NLF W T GP ++VYAG K+ SL+FP YP+
Sbjct: 9 SRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPF 68
Query: 416 APPVVKFMTPCFHPNVDTCGLICLDILKDK-WTALYDVRTVLLSIQSLLAEPNTQSPL 586
PP ++F T +HPN D+ G +CL ILK + + +R+VL I LL EPN PL
Sbjct: 69 QPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPL 126
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 95.9 bits (228), Expect = 5e-21
Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Frame = +2
Query: 239 KRLQKELMELMRCSDKGISAFPESEN-LFKWIGTINGPLETVYAGHKYKLSLEFPNSYPY 415
+RL KE EL GI+A P +E+ F W I GP T + G Y +L+FP+ YP
Sbjct: 8 RRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPL 67
Query: 416 APPVVKFMTPCFHPNVDTCGLICLDIL-------------KDKWTALYDVRTVLLSIQSL 556
PP +KF FHPNV G +C+ IL ++W+ + V +LLS+ S+
Sbjct: 68 GPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSM 127
Query: 557 LAEPNTQSPLNQQASYLWPE 616
LAEPN +S N A +W E
Sbjct: 128 LAEPNDESGANIDACKMWRE 147
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 85.8 bits (203), Expect = 5e-18
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 14/138 (10%)
Frame = +2
Query: 230 AVSKRLQKELMELMRCSDKGISA-FPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNS 406
A + L+K+L E+ + +G S + +++F+W I GP +T+Y G + +L FP
Sbjct: 5 ASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQD 64
Query: 407 YPYAPPVVKFMTPCFHPNVDTCGLICLDILK-------------DKWTALYDVRTVLLSI 547
YP PP +KF T +HPNV G +C+ IL ++W ++ T+L+S+
Sbjct: 65 YPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISV 124
Query: 548 QSLLAEPNTQSPLNQQAS 601
S+L+ PN +SP N A+
Sbjct: 125 ISMLSSPNDESPANIDAA 142
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 85.4 bits (202), Expect = 7e-18
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Frame = +2
Query: 239 KRLQKELMELMRCSDKGISAF-PESE-NLFKWIGTINGPLETVYAGHKYKLSLEFPNSYP 412
KRL KE G+ P ++ ++F W I GP ET Y G ++ L + YP
Sbjct: 6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYP 65
Query: 413 YAPPVVKFMTPCFHPNVD-TCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLN 589
+PP V F T HPN+ T G +C+DILK W+ + +++ L+I SLL+ + SPLN
Sbjct: 66 ISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLN 125
Query: 590 QQASYL 607
A+ L
Sbjct: 126 VDAAKL 131
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 83.0 bits (196), Expect = 4e-17
Identities = 48/126 (38%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Frame = +2
Query: 242 RLQKELMELMRCSDKGISAFP--ESE---NLFKWIGTINGPLETVYAGHKYKLSLEFPNS 406
RLQ+E + R G A P S+ +L W I G +T + G YKL++ FP
Sbjct: 8 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 67
Query: 407 YPYAPPVVKFMTPCFHPNVDTCGLICLDILKDK--WTALYDVRTVLLSIQSLLAEPNTQS 580
YP PP +F P FHPNV G +CL IL ++ W ++ +LL IQ LL +PN S
Sbjct: 68 YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIAS 127
Query: 581 PLNQQA 598
P +A
Sbjct: 128 PAQTEA 133
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 82.2 bits (194), Expect = 7e-17
Identities = 39/125 (31%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +2
Query: 239 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 418
+R++ ++M+L+ SD ++ ++N+ ++ +GP ET Y+G +K+ +E P+ YP+
Sbjct: 6 RRIETDVMKLLM-SDYEVTLV--NDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWK 62
Query: 419 PPVVKFMTPCFHPNVD-TCGLICLDILKDKWTALYDVRTVL-LSIQSLLAEPNTQSPLNQ 592
P + F+ FHPN+D G +CLD++ W+ ++D+ + + + LL PN PLN
Sbjct: 63 SPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNG 122
Query: 593 QASYL 607
+A+ L
Sbjct: 123 EAAAL 127
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 81.0 bits (191), Expect = 2e-16
Identities = 31/85 (36%), Positives = 54/85 (63%)
Frame = +2
Query: 347 PLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDV 526
P E Y G K+K ++ ++YP+ PP VK + +HPN+D G +CL+IL+ W + ++
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119
Query: 527 RTVLLSIQSLLAEPNTQSPLNQQAS 601
++L+ +Q L PN + PLN++A+
Sbjct: 120 NSILVGLQFLFLSPNAEDPLNKEAA 144
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 69.3 bits (162), Expect = 5e-13
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Frame = +2
Query: 239 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 418
KRL KE + L + + + A P +EN+ +W I GP +T Y G +Y +L FP YP+
Sbjct: 8 KRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFK 67
Query: 419 PPVVKFMTPC--FHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLL 559
PP ++ +TP F N C L D W + V T+L+ + S +
Sbjct: 68 PPAIRMITPSGRFQTNTRLC-LSFSDFHPKSWNPSWMVSTILVGLVSFM 115
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 46.4 bits (105), Expect = 4e-06
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 317 LFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVD-TCGLI---C 484
L W TI GP +V+ Y L + +YP APP+V F++ P VD G +
Sbjct: 38 LSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHK 97
Query: 485 LDILKDKWTALYDVRTVLLSIQSLLAEPNTQ 577
+D L+ W Y + TVLL ++ +A + +
Sbjct: 98 IDCLR-HWKREYSMETVLLDLKKEMASSSNR 127
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 287 LYHCTALAPLALSGVVCSQHDCLLV*SCLHSA 192
LY C A + ++G VC CL V C H A
Sbjct: 181 LYECNACREIVIAGYVCDCGYCLHVYCCKHLA 212
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 149 QNINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMR 274
QNI+ ++ + S K SED KL +N +V + + + ++
Sbjct: 920 QNISTNHTNDSAALKSSEDHSKLANNFSVPDSIDHKFYQQVK 961
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 316 PLQMDRDHQWTFRN 357
P+QMD+DH + F N
Sbjct: 237 PIQMDKDHSYNFAN 250
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 170 ASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISA 298
+ + N + S K++HA K+LQKE + +D + A
Sbjct: 91 SEAENDEESSSQKSNSKESHAQRKKLQKERKAMKPFADTSLKA 133
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 380 KLSLEFPNSYPYAPPVVKFMTPCFHPNV 463
KLS+E+ N P AP +V CF +V
Sbjct: 112 KLSMEWDNIMPNAPGLVNLGNTCFMNSV 139
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 341 NGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDI 493
NG + V+ H L + PY V++ MTP HP+ C L L +
Sbjct: 296 NGAVSGVFTAHDVVLRVLAAGLDPYRSSVIRVMTP--HPD---CALASLRV 341
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 374 KYKLSLEFPNSYPYAPPVVK 433
K L +E SYPY PV+K
Sbjct: 62 KLDLCIELGRSYPYVKPVIK 81
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 152 NINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELM--RCSDKGISAFPESENLFK 325
N P+Y SS P +ED + ++++ A +K+ + + + K S F E +
Sbjct: 175 NCWPYYTSS--PTSDAEDLVYIQNSKATNKKYMATVSPIFYTHFTSKNYSFFSEGLWFTR 232
Query: 326 WIGTI 340
W+ I
Sbjct: 233 WMQLI 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,590
Number of Sequences: 5004
Number of extensions: 59840
Number of successful extensions: 187
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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